SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene137267

Length: 415 nt

UniGene Fasta

>sp_v3.0_unigene137267
TGTCCCTAGTATAAAGATCCAAAAACAAAGGTATTAAGAATTTTGCTCCATTAAAACCTTTGTTTTTGGATCTTTATCTGGGCAGCCATACATACCTTCCTGCATTTGTTTCTGCACCTGTGGTCTCCTTGGCATTAGAGAGAGGCTGAGAACTGTGATTTAAGTGTCTGACTGATTACAAGGGAAGCTAAAGTCACTTAAGTATTAAGTGGCTGATTAAAGGGGAAAGTACGAGTATTGGCTTAATAACTGTGAGAAGTATGTACACAGGTGTATTATCTTAAGTTTAAGATCTATGGGTCTGGCATTTAGATCAGTGACAAGTATGCACACGGTTATAATATTATAATATGCTATTATTTTGAATTTAAGTATATATCCTATTTTGACTTGAACATAAATATAATATTTGAAC

Ace file of the UniGene sp_v3.0_unigene137267

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	coatomer alpha subunit-like protein [Lotus japonicus]	-	-	7.0e-10	74%
FL-Next	sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	62%

Source	Gene names
Sma3	At1g62020; At2g21390; CM0216.440.nc; F3K23.15; F8K4.21; GSVIVT00014508001; POPTRDRAFT_570035; POPTRDRAFT_575095;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	COPI vesicle coat	GO:0030126	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G21390.1	Coatomer, alpha subunit chr2:9152428-9156577 FORWARD LENGTH=1218	1.0e-11	74%
RefSeq	Arabidopsis thaliana	NP_179734.1	coatomer subunit alpha-2 [Arabidopsis thaliana]	1.0e-11	74%
RefSeq	Populus trichocarpa	XP_002318013.1	predicted protein [Populus trichocarpa]	7.0e-13	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0J3D9

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 145 aas, your sequence is shorter than subject: 49 - 1218

Fln protein: SLV*RSKNKGIKNFAPLKPLFLDLYLGSHTYLPAFVSAPVVSLALERG*

Protein Length: 50

Fln nts: TGTCCCTAGTATAAAGATCCAAAAACAAAGGTATTAAGAATTTTGCTCCATTAAAACCTTTGTTTTTGGATCTTTATCTGGGCAGCCATACATACCTTCCTGCATTTGTTTCTGCACCTGTGGTCTCCTTGGCATTAGAGAGAGGCTGAGAACTGTGATTTAAGTGTCTGACTGATTACAAGGGAAGCTAAAGTCACTTAAGTATTAAGTGGCTGATTAAAGGGGAAAGTACGAGTATTGGCTTAATAACTGTGAGAAGTATGTACACAGGTGTATTATCTTAAGTTTAAGATCTATGGGTCTGGCATTTAGATCAGTGACAAGTATGCACACGGTTATAATATTATAATATGCTATTATTTTGAATTTAAGTATATATCCTATTTTGACTTGAACATAAATATAATATTTGAAC

Fln Alignment:

AllPine_a_rep_c94892___SKNKGIKNFAPLKPLFLDLYLGSHTYLPAFVSAPVVSLALERG
Q0J3D9________________SRQLGIKNFAPLKPLFLDLHMGSHSYLRALATAPIIPVAVEKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain