SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene137240

Length: 207 nt

UniGene Fasta

>sp_v3.0_unigene137240
AATGTACATATATCCTAATGTCATCACATACAGTGCACTTATTGATGCTTTCTGTAAGGAAGGCAAGTTGGAAGAGGCTGTGACACTCTTCTATGAAATGGCCAGCAAAGAATAAGCCCTAATGTCATCACATACAATGTGCTTATTGATGGTTTATGTAAGCAAGGCAAAATAGACGAGGGTAGGAAGCTCTTTTATGAAATGCCT

Ace file of the UniGene sp_v3.0_unigene137240

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PPR protein n=8 Tax=Raphanus sativus RepID=B9VQL7_RAPSA	-	-	7.0e-11	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G63130.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr1:23412854-23414746 FORWARD LENGTH=630	6.0e-13	64%
RefSeq	Arabidopsis thaliana	NP_176501.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	7.0e-13	64%
RefSeq	Populus trichocarpa	XP_002320961.1	predicted protein [Populus trichocarpa]	6.0e-11	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN20

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 267 aas, your sequence is shorter than subject: 69 - 420

Fln protein: MYIYPNVITYSALIDAFCKEGKLEEAVTLFYEMASxxxSPNVITYNVLIDGLCKQGKIDEGRKLFYEMP

Protein Length: 70

Fln nts: AATGTACATATATCCTAATGTCATCACATACAGTGCACTTATTGATGCTTTCTGTAAGGAAGGCAAGTTGGAAGAGGCTGTGACACTCTTCTATGAAATGGCCAGCAAxxxxxxAAGCCCTAATGTCATCACATACAATGTGCTTATTGATGGTTTATGTAAGCAAGGCAAAATAGACGAGGGTAGGAAGCTCTTTTATGAAATGCCT

Fln Alignment:

AllPine_a_rep_c94841___IYPNVITYSALIDAFCKEGKLEEAVTLFYEMxxSPNVITYNVLIDGLCKQGKIDEGRKLFYEM
B8LN20________________ITPNTVTYTALIQGLCDCGEVERAILVLKEMxxAPDSFTYNILINGLCKDAQLEMGVSLMDEM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain