SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene137211

Length: 238 nt

UniGene Fasta

>sp_v3.0_unigene137211
AATGTATCAGACTTCAGGATGATACCGTTCGGGGCAGGAAGGAGAGGATGCCCAGGGGCTCCCATGGCTATTCCTACCATTGAGCTTGCATTGGCTCAGTTGTTGCACACTTTTGATTGGAAAGTTGAAGGCGATCCCTCCGAGCTGGATATGAAAGAAGCGTGTGGAGTGACGATTTCCAGACAAGTTCCCCTCTGTGCTTATCCGACACTAAGGGCCAGCTTTTCATTATAAACCG

Ace file of the UniGene sp_v3.0_unigene137211

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome p450 (Fragment) n=6 Tax=Pinus RepID=B0ZQH8_PINTA	-	-	1.0e-27	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Chromosome chr17 scaffold_12, whole genome shotgun sequence	-	-	2.358e-06	-

Source	Gene names
Sma3	CYP71D10; CYP750A1; GSVIVT00015950001; GSVIVT00015956001; GSVIVT00015958001; VITISV_035274; cyp450; lim3h;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45580.1	CYP76C3 cytochrome P450, family 76, subfamily C, polypeptide 3 chr2:18782388-18784286 REVERSE LENGTH=515	2.0e-17	45%
RefSeq	Arabidopsis thaliana	NP_182082.2	cytochrome P450 76C3 [Arabidopsis thaliana]	3.0e-17	45%
RefSeq	Populus trichocarpa	XP_002334672.1	cytochrome P450 [Populus trichocarpa]	2.0e-18	49%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPU6

Fln msg: your sequence is shorter than subject: 78 - 526

Fln protein: NVSDFRMIPFGAGRRGCPGAPMAIPTIELALAQLLHTFDWKVEGDPSELDMKEACGVTISRQVPLCAYPTLRASFSL*

Protein Length: 79

Fln nts: AATGTATCAGACTTCAGGATGATACCGTTCGGGGCAGGAAGGAGAGGATGCCCAGGGGCTCCCATGGCTATTCCTACCATTGAGCTTGCATTGGCTCAGTTGTTGCACACTTTTGATTGGAAAGTTGAAGGCGATCCCTCCGAGCTGGATATGAAAGAAGCGTGTGGAGTGACGATTTCCAGACAAGTTCCCCTCTGTGCTTATCCGACACTAAGGGCCAGCTTTTCATTATAA___ACCG

Fln Alignment:

AllPine_a_rep_c94760___SDFRMIPFGAGRRGCPGAPMAIPTIELALAQLLHTFDWKVEGDPSELDMKEACGVTISRQVPLCAYPTLRASFSL
C0PPU6________________SDFSMIPFGAGRRGCPGASMAIPTIELALAQLLHTFDWRVEGDPSQLDMKEVCGVTIPRQVPLCAYPRLRVSFPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain