SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene137158

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene137158
AATGTACAAGGTCTTCAAGTCATTCATAGGTATGGGATACTACAACACCTCTGTTCCCGCTGTAATTCTTCGCAACATAATGGAGAATCCCGGTTGGTATACGCAGTATACCCCTTACCAGGCAGAGATTGCCCAGGGTAGGCTGGAGTCCCTCATGAATTCATTATTGATTTAAGACATTTCAAGGTGTCTGCTGGAATAGAACCAGAAGATGTTGCTAAAAGACTTATGGACTATGGATTCCATGC

Ace file of the UniGene sp_v3.0_unigene137158

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycine dehydrogenase [decarboxylating] A, mitochondrial n=4 Tax=Flaveria RepID=GCSPA_FLAPR	-	-	1.0e-21	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Glycine dehydrogenase [decarboxylating], mitochondrial	-	-	8.674e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glycine dehydrogenase (decarboxylating).	EC:1.4.4.2	-	3.008e-26	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycine, serine and threonine metabolism	00260		3.008e-26	%
Sma3	Metabolic pathways	01100		3.008e-26	%

Source	Gene names
Sma3	At2g26080; At4g33010; B1142C05.6-1; B1142C05.6-2; B1142C05.6-3; CHLREDRAFT_136984; F26P21.130; GCSP; GDC; GDCP; GDCSP; GDCSPA; GDCSPB; GSVIVT00016572001; GSVIVT00032211001; MICPUCDRAFT_24398; MICPUN_104877; OSTLU_26284; Os01g0711400; Os06g0611900; OsI_034

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	glycine cleavage complex	GO:0005960	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	glycine dehydrogenase (decarboxylating) activity	GO:0004375	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	glycine metabolic process	GO:0006544	Biological Process	-
Sma3	glycine catabolic process	GO:0006546	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycine cleavage system P protein, homodimeric	IPR003437	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33010.1	AtGLDP1, GLDP1 glycine decarboxylase P-protein 1 chr4:15926852-15931150 REVERSE LENGTH=1037	1.0e-25	90%
RefSeq	Arabidopsis thaliana	NP_001119106.1	glycine dehydrogenase [decarboxylating] 2 [Arabidopsis thaliana]	1.0e-25	90%
RefSeq	Populus trichocarpa	XP_002308562.1	precursor of carboxylase p-protein 1, glycine decarboxylase complex [Populus trichocarpa]	5.0e-25	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ48

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 125 aas, your sequence is shorter than subject: 82 - 780

Fln protein: NVQGLQVIHRYGILQHLCSRCNSSQHNGESRLVYAVYPLPGRDCPG*AGVPHEFIIDLRHFKVSAGIEPEDVAKRLMDYGFH

Protein Length: 83

Fln nts: AATGTACAAGGTCTTCAAGTCATTCATAGGTATGGGATACTACAACACCTCTGTTCCCGCTGTAATTCTTCGCAACATAATGGAGAATCCCGGTTGGTATACGCAGTATACCCCTTACCAGGCAGAGATTGCCCAGGGTAGGCTGGAGTCCCTCATGAATTCATTATTGATTTAAGACATTTCAAGGTGTCTGCTGGAATAGAACCAGAAGATGTTGCTAAAAGACTTATGGACTATGGATTCCATGC

Fln Alignment:

AllPine_a_rep_c94637___HEFIIDLRHFKVSAGIEPEDVAKRLMDYGFH
C0PQ48________________HEFIIDLRHFKVSAGIEPEDVAKRLMDYGFH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain