SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene136992

Length: 388 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene136992
AAGTTAGTTGGGGATGAAATACCAAGTGAACTACCCCGTATTTGAAGAATCAACTATCATATATATTTGATTGTAGGAGAAATTATTCCAAATAAGGGAGCCTATAGAATTAATCCTCAAGAAGAATGAAGAAATAAAGCAAGTGCAAGAGTTGTTGGACAAAGGCCATATCAAAGAAATTTTAATCCCATGTGCTATTCCAACAATTGTTAATCAAAAGTAATATGGTGGGTGGAGGATGTCTATTTATTCGAGGGCCATCAACAAAATCACAATCAAGTATATATTTTCTCTTCCACACATTTATGATTTAATTAATTGTTTCAGTGGTGCTAGACATTTTTCTAAGATTGAATGGAAGAGTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene136992 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD4_SILLA	-	-	1.0e-18	48%
FL-Next	tr=Gag-pol polyprotein; Silene latifolia (White campion) (Bladder campion).	-	-	0.0	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: E7BQD4

Fln msg: Separated hits, possible frame ERROR between 117 and 140, Unexpected STOP codon at 3' end. Distance to subject end: 801 aas, your sequence is shorter than subject: 123 - 1518

Fln protein: KLVGDEIPSELPRI*RINYHIYLIVGEIIPNKGAYRINxxxxxxxxxQVQELLDKGHIKEILIPCAIPTIVNQK*YGGWRMSIYSRAINKITIKYIFSLPHIYDLINCFSGARHFSKIEWKS*

Protein Length: 124

Fln nts: AAGTTAGTTGGGGATGAAATACCAAGTGAACTACCCCGTATTTGAAGAATCAACTATCATATATATTTGATTGTAGGAGAAATTATTCCAAATAAGGGAGCCTATAGAATTAATCCxxxxxxxxxxxxxxxxxxxxxxxxGCAAGTGCAAGAGTTGTTGGACAAAGGCCATATCAAAGAAATTTTAATCCCATGTGCTATTCCAACAATTGTTAATCAAAAGTAATATGGTGGGTGGAGGATGTCTATTTATTCGAGGGCCATCAACAAAATCACAATCAAGTATATATTTTCTCTTCCACACATTTATGATTTAATTAATTGTTTCAGTGGTGCTAGACATTTTTCTAAGATTGAATGGAAGAGTTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

AllPine_a_rep_c94381___DEIPSELPRI*RINYHIYLIVGEIIPNKGAYRINPxxxxxxxxQVQELLDKGHIKEILIPCAIPTIVNQK*YGGWRMSIYSRAINKITIKYIFSLPHIYDLINCFSGARHFSKIE
E7BQD4________________DELPSGLPPLRGIEHHIDLVPGSVLPNKPAYRCDPxxxxxxxxQIEELMAKGFVRESLSPCAVPALLVPKKDGTWRMCTDSRAINNITVKYRFPIPRLDDMLDELSGASIFSKID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain