SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene136892

Length: 276 nt

UniGene Fasta

>sp_v3.0_unigene136892
ATGGCTGGCGTGGAGACACCATTCTTTGCTCTTGCAATTAGCGTCGTTTTCTTGGCTTTCACTCTCCTGACAAGTTGCATATCAAAAATGAAGTTCGGAGGATTGCTCTTATATTCAGTGGAGCAGCGGTTGCTACTGTATTGATATATTTATTACAGCACTATTTCTATACCTTGATGGGAGAACGCCTCACTAGACGCATCCGAGAGATGATGTTCTCAGGTATAAAATATGGTAGTCATTGCAAGTTTACATACAATTGAGGAAATGCTGCAT

Ace file of the UniGene sp_v3.0_unigene136892

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, subfamily B, member 18, group MDR/PGP protein PpABCB18 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RU14_PHYPA	-	-	5.0e-15	59%
FL-Next	sp=ABC transporter B family member 13; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%

Source	Gene names
Sma3	At1g27940; At1g28010; F13K9.11; F13K9.5; GSVIVT00014386001; MDR12; MDR15; PGP13; PGP14; PHYPADRAFT_56126; POPTRDRAFT_798405; RCOM_1598590; VITISV_031708; ppabcb18;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G27940.1	PGP13 P-glycoprotein 13 chr1:9733597-9738129 REVERSE LENGTH=1245	1.0e-15	59%
RefSeq	Arabidopsis thaliana	NP_174115.1	ABC transporter B family member 13 [Arabidopsis thaliana]	2.0e-15	59%
RefSeq	Populus trichocarpa	XP_002301961.1	multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]	3.0e-17	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C7F8

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 464 aas, your sequence is shorter than subject: 87 - 1245

Fln protein: GWRGDTILCSCN*RRFLGFHSPDKLHIKNEVRRIALIFSGAAVATVLIYLLQHYFYTLMGERLTRRIREMMFSGIKYGSHCKFTYN*

Protein Length: 88

Fln nts: ATGGCTGGCGTGGAGACACCATTCTTTGCTCTTGCAATTAGCGTCGTTTTCTTGGCTTTCACTCTCCTGACAAGTTGCATATCAAAAATGAAGTTCGGAGGATTGCTCTTATATTCAGTGGAGCAGCGGTTGCTACTGTATTGATATATTTATTACAGCACTATTTCTATACCTTGATGGGAGAACGCCTCACTAGACGCATCCGAGAGATGATGTTCTCAGGTATAAAATATGGTAGTCATTGCAAGTTTACATACAATTGAGGAAATGCTGCAT

Fln Alignment:

AllPine_a_rep_c94247___FHSPDKLHIKNEVRRIALIFSGAAVATVLIYLLQHYFYTLMGERLTRRIREMMFSGI
Q9C7F8________________FYSPFPNVIKRDVEKVAIIFAGAGIVTAPIYLLQHYFYTLMGERLTSRVRLSLFSAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain