SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene136885

Length: 279 nt

UniGene Fasta

>sp_v3.0_unigene136885
CGTCGTGACCTTGGCTGTCACTCATCTGGTCGAAATTGAAAGAACTGTGTTTTACAGAGAGAAGGCTGCGGGAATGTATTCTGCTTTACCCTACGCCTTTGCACAGGCTGCCATAGAAATTCCCTACGTGTTCATCCCGTCTGCTCTTTGCTGTCTCTGGTGTATTCTATGATGGACTTTCAATGGGACGCAGACAAATTTTTCTGGTATCTCTTCTTCTCGTTCTTCACGTTCCTATATTTCACGTATTATGGAATGATGACCATGTCATTGACGCCC

Ace file of the UniGene sp_v3.0_unigene136885

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NpPDR1 emb\|CAC40990.1\| ABC1 protein [Nicotiana plumbaginifolia]	-	-	6.0e-13	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	ATP-binding cassette transporter, putative	-	-	6.108e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	5.484e-28	-

Source	Gene names
Sma3	ABC1; At1g15520; GSVIVT00000322001; GSVIVT00021655001; GSVIVT00022064001; GSVIVT00022068001; GSVIVT00034309001; GSVIVT00034316001; GSVIVT00034319001; GSVIVT00034504001; GSVIVT00034515001; GSVIVT00034944001; GSVIVT00034949001; GSVIVT00034952001; GSVIVT0003

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15210.1	PDR7, ATPDR7 pleiotropic drug resistance 7 chr1:5231552-5236573 REVERSE LENGTH=1442	5.0e-14	67%
RefSeq	Arabidopsis thaliana	NP_172973.1	ABC transporter G family member 35 [Arabidopsis thaliana]	7.0e-14	67%
RefSeq	Populus trichocarpa	XP_002297805.1	predicted protein [Populus trichocarpa]	3.0e-16	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: Overlapping hits, possible frame ERROR between 157 and 157, Distance to subject end: 117 aas, your sequence is shorter than subject: 93 - 412

Fln protein: VVTLAVTHLVEIERTVFYREKAAGMYSALPYAFAQAAIEIPYVFIPSALCCxxVYSMMDFQWDADKFFWYLFFSFFTFLYFTYYGMMTMSLTP

Protein Length: 94

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTGGTCGAAATTGAAAGAACTGTGTTTTACAGAGAGAAGGCTGCGGGAATGTATTCTGCTTTACCCTACGCCTTTGCACAGGCTGCCATAGAAATTCCCTACGTGTTCATCCCGTCTGCTCTTTGCTGTxxxxxxGTGTATTCTATGATGGACTTTCAATGGGACGCAGACAAATTTTTCTGGTATCTCTTCTTCTCGTTCTTCACGTTCCTATATTTCACGTATTATGGAATGATGACCATGTCATTGACGCCC

Fln Alignment:

AllPine_a_rep_c94237___VTHLVEIERTVFYREKAAGMYSALPYAFAQAAIEIPYVFIPSALCCLLVYSMMDFQWDADKXXXXXXXXXXXXXXXXXXGMMTMSLTP
D5ACV1________________VQPVVGVQRTVFYREKAAGMYSAIPYAVAQTAIEIPYILIQTTIYSLIVYSMIDFQWTTVKFFWFLFYMFMCFVYFTLYGMMAVALTP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain