SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene136537

Length: 413 nt

UniGene Fasta

>sp_v3.0_unigene136537
CGTCGTGACCTTGGCTGTCACTCATACTTGAATGTCTTTGCCTCCATATACTCTGTGCTCAAAGATCTCAAGAAAGACGGCTACAACGTTGAGGGGCTGCCTGAGACTTCTGCAGAACTGATTGAAGAAGTAATTCACGACAAAGAAGCTCAGTTCAGCAGCCCAAATCTTAACATAGCTTACAAGATGAGCGTTAGAGAATACCAGAAGCTAACCCCCTATGCTACTGCTCTTGAAGAGAACTGGGGGAAAGCACCTGGTAATTTGAACTCTGATGGAGAAAACCTCTTGGTATATGGTAAACAGTATGGTAATGTCTTTATCGGTGTTCAGCCCACATTTGGATACGAGGGTGACCCGATGAGACTTCTGTTCTCCAAATCAGCTAGCCCTCACCATGGTTTGCTGCATAC

Ace file of the UniGene sp_v3.0_unigene136537

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mg protoporphyrin IX chelatase n=2 Tax=Nicotiana tabacum RepID=O22435_TOBAC	-	-	0.0	94%
FL-Next	sp=Magnesium-chelatase subunit ChlH, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	85%
Sma3	Magnesium-chelatase subunit chlH chloroplast	-	-	3.06e-09	-

Source	Gene names
Sma3	AT5G13630; At5g13630; CHLH; CHLH1; CHLH2; CHLREDRAFT_195524; Chl H; ChlH; ChlH1; GSVIVT00025597001; LOC_Os03g20700; MICPUCDRAFT_26233; MICPUN_104801; OSTLU_45384; Os03g0323200; Os07g0656500; OsI_11362; OsJ_10668; OsJ_25419; Ot04g02230; PHATR_13265; PHYPAD

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast inner membrane	GO:0009706	Cellular Component	-
Sma3	magnesium chelatase complex	GO:0010007	Cellular Component	-
Sma3	3'-5'-exoribonuclease activity	GO:0000175	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	magnesium chelatase activity	GO:0016851	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	chlorophyll biosynthetic process	GO:0015995	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Exoribonuclease, phosphorolytic domain 1	IPR001247	-	-
Sma3	CobN/magnesium chelatase	IPR003672	-	-
Sma3	Magnesium-chelatase, subunit H	IPR011771	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13630.1	GUN5, CCH, CHLH, CCH1, ABAR magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) chr5:4387567-4392082 REVERSE LENGTH=1381	85%
RefSeq	Arabidopsis thaliana	NP_001078578.1	magnesium chelatase subunit H [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002308946.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FNB0

Fln msg: Distance to subject end: 732 aas, your sequence is shorter than subject: 137 - 1381

Fln protein: RRDLGCHSYLNVFASIYSVLKDLKKDGYNVEGLPETSAELIEEVIHDKEAQFSSPNLNIAYKMSVREYQKLTPYATALEENWGKAPGNLNSDGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGLLH

Protein Length: 138

Fln nts: CGTCGTGACCTTGGCTGTCACTCATACTTGAATGTCTTTGCCTCCATATACTCTGTGCTCAAAGATCTCAAGAAAGACGGCTACAACGTTGAGGGGCTGCCTGAGACTTCTGCAGAACTGATTGAAGAAGTAATTCACGACAAAGAAGCTCAGTTCAGCAGCCCAAATCTTAACATAGCTTACAAGATGAGCGTTAGAGAATACCAGAAGCTAACCCCCTATGCTACTGCTCTTGAAGAGAACTGGGGGAAAGCACCTGGTAATTTGAACTCTGATGGAGAAAACCTCTTGGTATATGGTAAACAGTATGGTAATGTCTTTATCGGTGTTCAGCCCACATTTGGATACGAGGGTGACCCGATGAGACTTCTGTTCTCCAAATCAGCTAGCCCTCACCATGGTTTGCTGCATAC

Fln Alignment:

AllPine_a_rep_c93719___DLGCHSYLNVFASIYSVLKDLKKDGYNVEGLPETSAELIEEVIHDKEAQFSSPNLNIAYKMSVREYQKLTPYATALEENWGKAPGNLNSDGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHG
Q9FNB0________________NVGTAAYLNVFASIFSVLRDLKRDGYNVEGLPENAETLIEEIIHDKEAQFSSPNLNVAYKMGVREYQDLTPYANALEENWGKPPGNLNSDGENLLVYGKAYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain