SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene136495

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene136495
CGTCGTGACCTTGGCTGTCACTCACTTCTACAGGGGAGGTGAAAGATTATCGGATTTTAACTGATATACTAGGTCTGGAAGATCATTTGGGGGATATGGACTTCAAGATTGCTGGGACAAGGAAAGGGGTGACATCTATACAGTTGGACATTAAACCGGCTGGTATACCTCTTGATATTCTTTGTCAGTGTCTTGATCCTGCCTTTGAAGCTCGTAAGCAGA

Ace file of the UniGene sp_v3.0_unigene136495

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] emb\|CAB43864.1\| polynucleotide phosphorylase [Arabidopsis thaliana] emb\|CAB43865.1\| polynucleotide phosphorylase [Arabidopsis thaliana] emb\|CAB87625.1\| polynucleotide phosphorylase [Arabidop	-	-	3.0e-23	81%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	83%

Source	Gene names
Sma3	At5g14580; GSVIVT00020698001; MICPUN_88427; OJ1014_H03.14; OSTLU_12216; OsI_08089; OsJ_07542; Ot02g05570; PHYPADRAFT_151398; POPTRDRAFT_839043; Pnp; RCOM_1095710; T15N1_70;

Source	GOs	Term	Type	Identity
Sma3	3'-5'-exoribonuclease activity	GO:0000175	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	polyribonucleotide nucleotidyltransferase activity	GO:0004654	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	mRNA catabolic process	GO:0006402	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Exoribonuclease, phosphorolytic domain 1	IPR001247	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Polyribonucleotide nucleotidyltransferase	IPR012162	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Exoribonuclease, phosphorolytic domain 2	IPR015847	-	-
Sma3	Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type	IPR015848	-	-
Sma3		IPR018111	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G14580.1	polyribonucleotide nucleotidyltransferase, putative chr5:4697612-4703013 REVERSE LENGTH=991	3.0e-29	81%
RefSeq	Arabidopsis thaliana	NP_196962.1	polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]	5.0e-29	81%
RefSeq	Populus trichocarpa	XP_002300042.1	predicted protein [Populus trichocarpa]	2.0e-32	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GHS1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 370 aas, your sequence is shorter than subject: 73 - 961

Fln protein: S*PWLSLTSTGEVKDYRILTDILGLEDHLGDMDFKIAGTRKGVTSIQLDIKPAGIPLDILCQCLDPAFEARKQ

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTCTACAGGGGAGGTGAAAGATTATCGGATTTTAACTGATATACTAGGTCTGGAAGATCATTTGGGGGATATGGACTTCAAGATTGCTGGGACAAGGAAAGGGGTGACATCTATACAGTTGGACATTAAACCGGCTGGTATACCTCTTGATATTCTTTGTCAGTGTCTTGATCCTGCCTTTGAAGCTCGTAAGCAGA

Fln Alignment:

AllPine_a_rep_c93662___STGEVKDYRILTDILGLEDHLGDMDFKIAGTRKGVTSIQLDIKPAGIPLDILCQCLDPAFEARKQ
B9GHS1________________STGEIKDYRIVTDILGLEDHLGDMDFKIAGTRKGVTAVQLDIKPAGIPLDIICECLEPALKGRLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain