SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene136306

Length: 174 nt

UniGene Fasta

>sp_v3.0_unigene136306
ATCTACAAGGGGATCTGCAAATATGCCCGCTAAAATGGCACCTCCCCTTGTAGATGCTGTTGACAATTTTTCTGATGCAACAAGCATCCCTTCATTCTTCATCTCATTCATAATAATGCCTTTGGCTACAAACTCCAGTGAGGGTGTTTCAGCAATTATTTTTGCAAGCCGGAA

Ace file of the UniGene sp_v3.0_unigene136306

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein	-	-	2.0e-06	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Calcium ion binding protein, putative	-	-	1.01e-09	-

Source	Gene names
Sma3	At1g53210; GSVIVT00018692001; GSVIVT00027777001; GSVIVT00027780001; OSJNBa0011N12.6; OSJNBa0090H18.33; Os01g0212400; Os02g0247800; OsI_00872; OsI_26513; OsJ_00857; OsJ_06069; P0031E09.40; POPTRDRAFT_707778; RCOM_0554210; RCOM_0958730; RCOM_0958840; VITISV

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Sperm-activating peptide	IPR013254	-	-
Sma3	Calcium binding protein	IPR015754	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002298903.1	predicted protein [Populus trichocarpa]	1.0e-11	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A885

Fln msg: Distance to subject end: 93 aas, your sequence is shorter than subject: 57 - 233

Fln protein: STRGSANMPAKMAPPLVDAVDNFSDATSIPSFFISFIIMPLATNSSEGVSAIIFASR

Protein Length: 58

Fln nts: ATCTACAAGGGGATCTGCAAATATGCCCGCTAAAATGGCACCTCCCCTTGTAGATGCTGTTGACAATTTTTCTGATGCAACAAGCATCCCTTCATTCTTCATCTCATTCATAATAATGCCTTTGGCTACAAACTCCAGTGAGGGTGTTTCAGCAATTATTTTTGCAAGCCGGAA

Fln Alignment:

AllPine_a_rep_c93388___GSANMPAKMAPPLVDAVDNFSDATXXXXXXXXXXXMPLATNSSEGVSAIIFASR
D5A885________________GGAIIAGIFADPLVAAVDNFSDATSIPSFFISFIIMPLATNSSEGVSALIFASR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain