SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene136213

Length: 347 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene136213
AGAACAGAACCTATGAAATGATCCAGTCAACTGCATACTATGAAGCCTATGTCCATGTTTTGGAATGTCTTCAACGGCCAGAAATGAAAGATCTCCTTTCTGGGAGCACTTTCTATCATTAGAAACCCAACCTACGGAGCCAGGTTATCTGAAGAAAAGGCAGTTCAAGGATGCATATGACTTAGAATGTGCGTTTCCAAGGATCCGAAATTATTTGGGCAGAAGCACAATCCACATCTTGCAGAAATGGCCACAGTGGAATTCCACCTTAGATGAAAGCCAGATGGAAGCCGTGAAGCTGTGCCTGACAAAGAGGCTGGCTATTATTCAGGGCCCTCCTGGAACTG

Ace file of the UniGene sp_v3.0_unigene136213 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: NFX1-type zinc finger-containing protein 1-like, partial n=2 Tax=Xenopus (Silurana) tropicalis RepID=UPI0001DE74DB	-	-	2.0e-11	41%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8R9J3

Fln msg: Overlapping hits, possible frame ERROR between 95 and 86, Distance to subject end: 1191 aas, your sequence is shorter than subject: 115 - 1778

Fln protein: NRTYEMIQSTAYYEAYVHVLECLQRPExxxxxFWEHFLSLETQPTEPGYLKKRQFKDAYDLECAFPRIRNYLGRSTIHILQKWPQWNSTLDESQMEAVKLCLTKRLAIIQGPPGT

Protein Length: 116

Fln nts: AGAACAGAACCTATGAAATGATCCAGTCAACTGCATACTATGAAGCCTATGTCCATGTTTTGGAATGTCTTCAACGGCCAGAAxxxxxxxxxxxxxxxTTCTGGGAGCACTTTCTATCATTAGAAACCCAACCTACGGAGCCAGGTTATCTGAAGAAAAGGCAGTTCAAGGATGCATATGACTTAGAATGTGCGTTTCCAAGGATCCGAAATTATTTGGGCAGAAGCACAATCCACATCTTGCAGAAATGGCCACAGTGGAATTCCACCTTAGATGAAAGCCAGATGGAAGCCGTGAAGCTGTGCCTGACAAAGAGGCTGGCTATTATTCAGGGCCCTCCTGGAACTG

Fln Alignment:

AllPine_a_rep_c93238___YEMIQSTA-YYEAYVHVLECLQRPEMxxxPFWEHFLSLETQPTEPGYLKKRQFKDAYDLECAFPRIRNYLGRSTIHILQKWPQWNSTLDESQMEAVKLCLTKRLAIIQGPPGT
D8R9J3________________YVMVESAAAYFEAYSHVLKSLQREDMxxxPFKSHLISLVKHVKEPAYLPQRAEGDRYDFSSAFPGGTKEFGQFKFHILQDWPEWNSTLDSSQVAALKHALTKNLALIQGPPGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain