SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene136190

Length: 226 nt

UniGene Fasta

>sp_v3.0_unigene136190
GACTTGCTTCCAGAAGTGGTTCCCAATTACAAGACACCTTTCAGGCTTCTTCCTTATGGCACAAAAAGGTCAAAGTTGAATAATCAGGAGATGACCAATTTGCGTAAGCTTGCAAAGCCACTACCTGTTCACTTTGCCTTAGGGAGAAATAGGCGCCTCCAAGGATTAGCTGCTGCTATTTTAAAGATTTGGGAAAGATGTGAAATTGCTAAGATTGCTGTGAAGC

Ace file of the UniGene sp_v3.0_unigene136190

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRM family member 2 [Arabidopsis thaliana] gb\|AAM97013.1\| unknown protein [Arabidopsis thaliana] gb\|AAQ89616.1\| At3g01370 [Arabidopsis thaliana] gb\|AEE73657.1\| CRM family member 2 [Arabidopsis thaliana]	-	-	2.0e-23	69%
FL-Next	sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	0.0	66%
Sma3	Protein CHLOROPLAST RNA SPLICING 1	-	-	1.445e-12	-

Source	Gene names
Sma3	AT4g14510; AT4g29750; At3g01370; At3g18390; At3g23070; At4g29750; At5g16180; CFM2; CRS1; GSVIVT00016549001; GSVIVT00017691001; GSVIVT00020129001; GSVIVT00020812001; GSVIVT00038255001; LOC_Os08g27150; LOC_Os11g37990; OJ1001_G09.2; OJ1014_E02.14; OJ1506_A04

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	regulation of translation	GO:0006417	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA-binding, CRM domain	IPR001890	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01370.1	ATCFM2, CFM2 CRM family member 2 chr3:139033-143477 FORWARD LENGTH=1011	2.0e-29	69%
RefSeq	Arabidopsis thaliana	NP_186786.2	CRM family member 2 [Arabidopsis thaliana]	3.0e-29	69%
RefSeq	Populus trichocarpa	XP_002317913.1	predicted protein [Populus trichocarpa]	2.0e-27	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6YYA3

Fln msg: Distance to subject end: 322 aas, your sequence is shorter than subject: 75 - 725

Fln protein: DLLPEVVPNYKTPFRLLPYGTKRSKLNNQEMTNLRKLAKPLPVHFALGRNRRLQGLAAAILKIWERCEIAKIAVK

Protein Length: 76

Fln nts: GACTTGCTTCCAGAAGTGGTTCCCAATTACAAGACACCTTTCAGGCTTCTTCCTTATGGCACAAAAAGGTCAAAGTTGAATAATCAGGAGATGACCAATTTGCGTAAGCTTGCAAAGCCACTACCTGTTCACTTTGCCTTAGGGAGAAATAGGCGCCTCCAAGGATTAGCTGCTGCTATTTTAAAGATTTGGGAAAGATGTGAAATTGCTAAGATTGCTGTGAAGC

Fln Alignment:

AllPine_a_rep_c93191___DLLPEVVPNYKTPFRLLPYGTKRSKLNNQEMTNLRKLAKPLPVHFALGRNRRLQGLAAAILKIWERCEIAKIAVK
Q6YYA3________________DLLPEVVPDFKTPFRQCPPGV-RPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain