SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135990

Length: 298 nt

UniGene Fasta

>sp_v3.0_unigene135990
TTGTCCAGTAAAAACAGACCCAAAATAGCGGACTTTGGTTTAGCCAAACTCTTTGCAGAAGATGAGAGCCATGTCAGCACTAGAGTTGCAGGAACATTAGGTTACATGGCCCCTGAGTACGCCTTACGCGGACAGCTGACAGAGAAAGCAGATGTATTCAGCTTTGGAGTTCTTTTACTTGAGGTTATCAGCGGAAGAAAGAATCATGTTGCGGGTGAAGAGATGGAGTTTCTCATTGAAAGAGCATGGAGATTGTATGACACAGAGAAAGCATTAGCAATTATGGATCCTACATTGG

Ace file of the UniGene sp_v3.0_unigene135990

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	6.0e-07	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Serine/threonine-protein kinase receptor	-	-	8.815e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.544e-13	-
Sma3	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	1.969e-06	-

Source	Gene names
Sma3	AT1G53440; At1g16670; At1g70520; At1g70530; At4g23140; At5g40380; B1153E06.9; CRK2; CRK3; CRK42; CRK6; F14G9.24; F19K19.4; F21P8.30; F24J13.10; F24J13.9; F7H19.330; GSVIVT00002759001; GSVIVT00002761001; GSVIVT00002762001; GSVIVT00016037001; GSVIVT00016044

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aconitase family, 4Fe-4S cluster binding site	IPR018136	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16670.1	Protein kinase superfamily protein chr1:5697846-5699492 FORWARD LENGTH=390	1.0e-31	57%
RefSeq	Arabidopsis thaliana	NP_564003.1	kinase domain-containing protein [Arabidopsis thaliana]	1.0e-31	57%
RefSeq	Populus trichocarpa	XP_002323571.1	predicted protein [Populus trichocarpa]	2.0e-34	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPW7

Fln msg: Distance to subject end: 105 aas, your sequence is shorter than subject: 99 - 702

Fln protein: LSSKNRPKIADFGLAKLFAEDESHVSTRVAGTLGYMAPEYALRGQLTEKADVFSFGVLLLEVISGRKNHVAGEEMEFLIERAWRLYDTEKALAIMDPTL

Protein Length: 100

Fln nts: TTGTCCAGTAAAAACAGACCCAAAATAGCGGACTTTGGTTTAGCCAAACTCTTTGCAGAAGATGAGAGCCATGTCAGCACTAGAGTTGCAGGAACATTAGGTTACATGGCCCCTGAGTACGCCTTACGCGGACAGCTGACAGAGAAAGCAGATGTATTCAGCTTTGGAGTTCTTTTACTTGAGGTTATCAGCGGAAGAAAGAATCATGTTGCGGGTGAAGAGATGGAGTTTCTCATTGAAAGAGCATGGAGATTGTATGACACAGAGAAAGCATTAGCAATTATGGATCCTACATTGG

Fln Alignment:

AllPine_a_rep_c92829___LSSKNRPKIADFGLAKLFAEDESHVSTRVAGTLGYMAPEYALRGQLTEKADVFSFGVLLLEVISGRKNHVAGEEMEFLIERAWRLYDTEKALAIMDPTL
C0PPW7________________LDDKHRPKIADFGLARFFAEDQSHVSTRVAGTLGYMAPEYALRGQLTEKADVFSFGVLVLEIISGRKNQSSTEDMEFLIEGTWRLYKANRGLEIMDPAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain