SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135887

Length: 243 nt

UniGene Fasta

>sp_v3.0_unigene135887
CGTCGTGACCTTTGCTGTTGGTCCTCCTGCGTTCTTCTCCTTCTTCAGCTACAGGAAACAACAGTTTGGAGTATTTGATGGATCAAAATAACAGGATTCTGAACTTCTGCAACAATGCGGGCATCGGAGCGAAACAATATCTTCCCCACTACACGAGCACTTCAGAGTGGGAAAGCCATTTTGGTACCAAGTGGTACAGATTCGTAGATCTGAAAAAGGCATACGATCCACACGCCATTCTGG

Ace file of the UniGene sp_v3.0_unigene135887

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytokinin dehydrogenase 1 [Arabidopsis thaliana] sp\|O22213.1\|CKX1_ARATH RecName: Full=Cytokinin dehydrogenase 1; AltName: Full=Cytokinin oxidase 1; Short=AtCKX1; Short=CKO 1; Flags: Precursor gb\|AAB84333.1\| putative cytokinin oxidase [Arabidopsis thaliana	-	-	3.0e-16	55%
FL-Next	sp=Cytokinin dehydrogenase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	Cytokinin oxidase	-	-	1.428e-07	-

Source	Gene names
Sma3	At3g63440; BrCKX1; CKX6; CKX7; Os01g0775400; OsI_03936; OsJ_03648; P0413G02.1; P0490D09.33; POPTRDRAFT_559778; cko1;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	cytokinin dehydrogenase activity	GO:0019139	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	cytokinin metabolic process	GO:0009690	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxygen oxidoreductase covalent FAD-binding site	IPR006093	-	-
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	Cytokinin dehydrogenase 1, FAD/cytokinin binding domain	IPR015345	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G41510.1	ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 chr2:17314626-17316861 FORWARD LENGTH=575	4.0e-21	55%
RefSeq	Arabidopsis thaliana	NP_181682.1	cytokinin dehydrogenase 1 [Arabidopsis thaliana]	5.0e-21	55%
RefSeq	Populus trichocarpa	XP_002323274.1	cytokinin oxidase [Populus trichocarpa]	2.0e-20	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22213

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 43 aas, your sequence is shorter than subject: 80 - 575

Fln protein: S*PLLLVLLRSSPSSATGNNSLEYLMDQNNRILNFCNNAGIGAKQYLPHYTSTSEWESHFGTKWYRFVDLKKAYDPHAIL

Protein Length: 81

Fln nts: CGTCGTGACCTTTGCTGTTGGTCCTCCTGCGTTCTTCTCCTTCTTCAGCTACAGGAAACAACAGTTTGGAGTATTTGATGGATCAAAATAACAGGATTCTGAACTTCTGCAACAATGCGGGCATCGGAGCGAAACAATATCTTCCCCACTACACGAGCACTTCAGAGTGGGAAAGCCATTTTGGTACCAAGTGGTACAGATTCGTAGATCTGAAAAAGGCATACGATCCACACGCCATTCTGG

Fln Alignment:

AllPine_a_rep_c92656___ATGNNSLEYLMDQNNRILNFCNNAGIGAKQYLPHYTSTSEWESHFGTKWYRFVDLKKAYDPHAIL
O22213________________SSGKNDLEYLLKQNQRVMNFCAAANLNVKQYLPHYETQKEWKSHFGKRWETFAQRKQAYDPLAIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain