SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135830

Length: 276 nt

UniGene Fasta

>sp_v3.0_unigene135830
GGGATGCAGCTAGCGCCATTCCCAGACTCGGAATTCCAAAGTATGAATGGTGGTCTGAAGCTTTACATGGGGTGTCTAATGTAGGTCCCGGGACACGGTTCGCAGCACCAGTTCGTGGTGCTCTTGGTTTTCCTCAAGTCATTCTTACGGCTGCTTCCTTCAATGAGACTCTGTGGGAAACCATTGGTCAGGTGGTATCGACAGAGGCACGGGGCATGTATAACGTGGGGTTGGCAGGGCTGACGTTCTGGAGTCCCAACGTGAATCTATTCTCTG

Ace file of the UniGene sp_v3.0_unigene135830

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[G] COG1472 Beta-glucosidase-related glycosidases	-	-	1.0e-17	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Beta-D-xylosidase	-	-	7.434e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	1.191e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		1.191e-16	%
Sma3	Starch and sucrose metabolism	00500		1.191e-16	%
Sma3	Phenylpropanoid biosynthesis	00940		1.191e-16	%
Sma3	Biosynthesis of secondary metabolites	01110		1.191e-16	%
Sma3	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	4.958e-15	-

Source	KEGGs	Term	e value	Identity
Sma3	Starch and sucrose metabolism	00500	4.958e-15	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	4.958e-15	%
Sma3	Metabolic pathways	01100	4.958e-15	%

Source	Gene names
Sma3	ARF; At1g02640; At1g78060; At5g09730; At5g10560; At5g10560/F12B17_90; At5g49360; At5g64570; B0414F07.1; B1011H02.4; BXL2; BXL3; BXL4; BXL7; F12B17_90; F17I14_80; GSVIVT00001462001; GSVIVT00008537001; GSVIVT00012513001; GSVIVT00015256001; GSVIVT00015257001

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	-
Sma3	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	xylan catabolic process	GO:0045493	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64570.1	XYL4, ATBXL4 beta-D-xylosidase 4 chr5:25810227-25813309 REVERSE LENGTH=784	6.0e-40	73%
RefSeq	Arabidopsis thaliana	NP_201262.1	beta-D-xylosidase 4 [Arabidopsis thaliana]	8.0e-40	73%
RefSeq	Populus trichocarpa	XP_002302759.1	predicted protein, partial [Populus trichocarpa]	6.99949e-42	73%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNI8

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 91 - 151

Fln protein: DAASAIPRLGIPKYEWWSEALHGVSNVGPGTRFAAPVRGALGFPQVILTAASFNETLWETIGQVVSTEARGMYNVGLAGLTFWSPNVNLFS

Protein Length: 92

Fln nts: GGGATGCAGCTAGCGCCATTCCCAGACTCGGAATTCCAAAGTATGAATGGTGGTCTGAAGCTTTACATGGGGTGTCTAATGTAGGTCCCGGGACACGGTTCGCAGCACCAGTTCGTGGTGCTCTTGGTTTTCCTCAAGTCATTCTTACGGCTGCTTCCTTCAATGAGACTCTGTGGGAAACCATTGGTCAGGTGGTATCGACAGAGGCACGGGGCATGTATAACGTGGGGTTGGCAGGGCTGACGTTCTGGAGTCCCAACGTGAATCTATTCTCTG

Fln Alignment:

AllPine_a_rep_c92542___DAASAIPRLGIPKYEWWSEALHGVSNVGPGTRFAAPVRGALGFPQVILTAASFNETLWETIGQV
B8LNI8________________NGASNISRLGIPMYEWWSEALHGVSDVGPGTRFGAPVPGATSFPQVILTAASFNDTLWEAIGRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain