SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135795

Length: 367 nt

UniGene Fasta

>sp_v3.0_unigene135795
TCCTGAGGGTAATTTAAGGATCGTGGACTTGTCCCACAACAAATTCACAGGTTCAATACCACCTAATGCAGGCAATCAGAATATCATGGAACAGCTGTCTCTGTCACACAATTATCTTAGCGGACCAATACCCTCTTCAATCGTCGTGATTTGGCTGTTGCTGGTTCTAGATCTCAGCTCCAATACACTGTCCGGTCCCATACCCAATACGGTGGGGAATTTGACACAACTGAACACTCTGGAGCTCAATGAAAATAGCTTGAGCGGAGCAATACCGAATGAGTTTCTGAATCTCACATCTCTGATGCAATTGAACGTGTCGTATAATTCTCTGTCGGGAAAAATTCCGGATGGGATCTTGCTTCGG

Ace file of the UniGene sp_v3.0_unigene135795

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0211200 protein n=5 Tax=Oryza sativa RepID=Q0E2V2_ORYSJ	-	-	5.0e-10	33%
FL-Next	tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	42%

Source	Gene names
Sma3	GSVIVT00013191001; GSVIVT00017148001; GSVIVT00017153001; GSVIVT00017828001; GSVIVT00017830001; GSVIVT00024827001; GSVIVT00025167001; GSVIVT00028531001; GSVIVT00029912001; GSVIVT00035501001; GSVIVT00035506001; GSVIVT00037820001; GSVIVT00038030001; LOC_Os10

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: I4DUG2

Fln msg: Distance to subject end: 232 aas, your sequence is shorter than subject: 122 - 743

Fln protein: PEGNLRIVDLSHNKFTGSIPPNAGNQNIMEQLSLSHNYLSGPIPSSIVVIWLLLVLDLSSNTLSGPIPNTVGNLTQLNTLELNENSLSGAIPNEFLNLTSLMQLNVSYNSLSGKIPDGILLR

Protein Length: 123

Fln nts: TCCTGAGGGTAATTTAAGGATCGTGGACTTGTCCCACAACAAATTCACAGGTTCAATACCACCTAATGCAGGCAATCAGAATATCATGGAACAGCTGTCTCTGTCACACAATTATCTTAGCGGACCAATACCCTCTTCAATCGTCGTGATTTGGCTGTTGCTGGTTCTAGATCTCAGCTCCAATACACTGTCCGGTCCCATACCCAATACGGTGGGGAATTTGACACAACTGAACACTCTGGAGCTCAATGAAAATAGCTTGAGCGGAGCAATACCGAATGAGTTTCTGAATCTCACATCTCTGATGCAATTGAACGTGTCGTATAATTCTCTGTCGGGAAAAATTCCGGATGGGATCTTGCTTCGG

Fln Alignment:

AllPine_a_rep_c92484___NLRIVDLSHNKFTGSIPPNAGNQNI-MEQLSLSHNYLSGPXXXXXXXXXXXXXXXXXXXXXXGPIPNTVGXXXXXXXXXXXXXXXXGAIPNEFLNLTSLMQLNVSYNSLSGKIPDGI
I4DUG2________________HLELIDVSDNHFTGVLPPSIGQLSPNLSRLNLSHNMISGTIPQQIANLTNLTFLDLGNNLFSGNIPSVIKRFRLLERLHLNGNKLEGSIPSEIGRMEHLGLLDLSLNQLSGKIPDSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain