SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135736

Length: 477 nt

UniGene Fasta

>sp_v3.0_unigene135736
CTCCAACTTCCTCACGTATTTCAACATTGGCACCATCCAATGTTGAAATACGTGAGGAAGTTGGAGAAGAAAATTTCTTTCTTTTCGGCGCTAGAGCACATGAAATTGCCGGACTGAGGAAAGAGAGAGTAGAAGGCAAGTTCAAACCGGACCCAAGGTTTGAAGAGGCAAAAGACTACATCAAGAGCGGGGTCTTTGGAAAATACAACTACACGCCTTTGCTCGATTCTCTTGAAGGGAGTGAGGGGTATGGTCGAGGTGATTACTTCCTTGTTGGCAAAGAAGTACACCTCGACCATATATTGAATGCCAAGAGAGCGTGGATGCTGCATATGGAGATCAAAGAGAAATGGACAAGGATGTCTATCCTAAACACGGCTGGTTCATACAAATTCAGCAGTGACCGAACGATACATGAATACGCAAAAGACATATGGGATGCAAAGCAAGTTCAATTACCCTAGAATTATTCCCCTT

Ace file of the UniGene sp_v3.0_unigene135736

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphorylase n=1 Tax=Picea sitchensis RepID=A9NUV6_PICSI	-	-	78%
FL-Next	sp=Phosphorylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Sma3	Phosphorylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphorylase.	EC:2.4.1.1	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	At3g29320; At3g46970; CmPhoH1; CmPhoL1; F13I12.20; GSVIVT00021049001; GSVIVT00024166001; GSVIVT00030064001; LOC_Os03g55090; MICPUCDRAFT_35182; MICPUN_104976; OSJNBa0040E01.3; OSTLU_25192; Os01g0851700; Os03g0758100; OsI_04460; OsI_13605; OsJ_04098; OsJ_12

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	phosphorylase activity	GO:0004645	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	response to temperature stimulus	GO:0009266	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 35	IPR000811	-	0.0	-
Sma3	Glycogen/starch/alpha-glucan phosphorylase	IPR011833	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G29320.1	Glycosyl transferase, family 35 chr3:11252871-11257587 FORWARD LENGTH=962	62%
RefSeq	Arabidopsis thaliana	NP_189578.1	glycosyl transferase, family 35 protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002316098.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUV6

Fln msg: your sequence is shorter than subject: 154 - 399

Fln protein: PTSSRISTLAPSNVEIREEVGEENFFLFGARAHEIAGLRKERVEGKFKPDPRFEEAKDYIKSGVFGKYNYTPLLDSLEGSEGYGRGDYFLVGKEVHLDHILNAKRAWMLHMEIKEKWTRMSILNTAGSYKFSSDRTIHEYAKDIWDAKQVQLP*

Protein Length: 155

Fln nts: CTCCAACTTCCTCACGTATTTCAACATTGGCACCATCCAATGTTGAAATACGTGAGGAAGTTGGAGAAGAAAATTTCTTTCTTTTCGGCGCTAGAGCACATGAAATTGCCGGACTGAGGAAAGAGAGAGTAGAAGGCAAGTTCAAACCGGACCCAAGGTTTGAAGAGGCAAAAGACTACATCAAGAGCGGGGTCTTTGGAAAATACAACTACACGCCTTTGCTCGATTCTCTTGAAGGGAGTGAGGGGTATGGTCGAGGTGATTACTTCCTTGTTGGCAAAGAAGTACACCTCGACCATATATTGAATGCCAAGAGAGCGTGGATGCTGCATATGGAGATCAAAGAGAAATGGACAAGGATGTCTATCCTAAACACGGCTGGTTCATACAAATTCAGCAGTGACCGAACGATACATGAATACGCAAAAGACATATGGGATGCAAAGCAAGTTCAATTACCCTAG___AATTATTCCCCTT

Fln Alignment:

AllPine_a_rep_c92358___ISTLAPSNVEIREEVGEENFFLFGARAHEIAGLRKERVEGKFKPDPRFEEAKDYIKSGVFGKYNYTPLLDSLEGSEGYGRGDYFLVGKEVHLDHILNAKRAWMLHMEIKEKWTRMSILNTAGSYKFSSDRTIHEYAKDIWDAKQVQLP
A9NUV6________________IGTLDGANVEIREEVGEENFFLFGARAHEIAGLRKERAEGKFKPDPRFEEAKDYIKSGVFGKYDYRPLIDSLEGNEGYGRGDYFLVGKDFPA-YVECQERVDAAYGD-QEKWTRMSILNTAGSYKFSSDRTIHEYAKDIWGVKQVKLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain