SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135708

Length: 465 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene135708
CTTTCGCTCGATGATCGCAGATCATCTGGACGTGAATGCGCAGGACGTGCAGGCCTACATCGTAGGCGAGCACGGCGACAGCTCGGTTGCCCTGTGGTCGAGCATCAGCGTGGGGGGCGTCCCAGTGTTGAGCTTCCTGGACAAACAGGAAATCCCGTACGAGAAAGAGCATCTGAAGGCCATTCACCAGAGCGTGGTTAACAGCGCTTATGAGGTTATCAAATTAAAGGGGTACACCTCGTGGGCTATAGGATACTCAACTGCTAACTTGGTGAAAAGTGTGATTCGAAACCAGAGGAGGGTTCATCCCGATTCGGTGATGGCCAAGGACTTCCACGGTATCGAAGAGGAGGTGTTCCTGAGCCTGCCTGCCCAGCTGGGAAGCGGAGGGATATTGGGCGTTGCCAGCATCCACTTGACAGAGGAAGAAACCCATTGTCTCAAGATGTCAGCGGACGCCATCTT

Ace file of the UniGene sp_v3.0_unigene135708 (antisense)

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	L-lactate dehydrogenase n=1 Tax=Picea sitchensis RepID=D5AAB2_PICSI	-	-	79%
FL-Next	sp=L-lactate dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Sma3	L-lactate dehydrogenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	L-lactate dehydrogenase.	EC:1.1.1.27	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	%
Sma3	Cysteine and methionine metabolism	00270	%
Sma3	Pyruvate metabolism	00620	%
Sma3	Propanoate metabolism	00640	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	31.t00021; 40.t00009; AT4g17260; At4g17260; GSVIVT00009618001; GSVIVT00026376001; LDH-2; LDH-2a; LDH1; LT36RGLDH; OJ1212_C06.24; OJ1359_D06.5; OJA1212_C06.25; Os02g0105400; Os06g0104900; OsI_05489; OsI_21291; OsI_21292; OsJ_05023; OsJ_19824; P0644B06.17;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	L-lactate dehydrogenase activity	GO:0004459	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3		GO:0019642	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	L-lactate/malate dehydrogenase	IPR001557	-	-
Sma3	L-lactate dehydrogenase	IPR011304	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17260.1	Lactate/malate dehydrogenase family protein chr4:9674057-9675309 FORWARD LENGTH=353	65%
RefSeq	Arabidopsis thaliana	NP_193459.1	L-lactate dehydrogenase [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002303510.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAB2

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 154 - 422

Fln protein: FRSMIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLDKQEIPYEKEHLKAIHQSVVNSAYEVIKLKGYTSWAIGYSTANLVKSVIRNQRRVHPDSVMAKDFHGIEEEVFLSLPAQLGSGGILGVASIHLTEEETHCLKMSADAI

Protein Length: 155

Fln nts: CTTTCGCTCGATGATCGCAGATCATCTGGACGTGAATGCGCAGGACGTGCAGGCCTACATCGTAGGCGAGCACGGCGACAGCTCGGTTGCCCTGTGGTCGAGCATCAGCGTGGGGGGCGTCCCAGTGTTGAGCTTCCTGGACAAACAGGAAATCCCGTACGAGAAAGAGCATCTGAAGGCCATTCACCAGAGCGTGGTTAACAGCGCTTATGAGGTTATCAAATTAAAGGGGTACACCTCGTGGGCTATAGGATACTCAACTGCTAACTTGGTGAAAAGTGTGATTCGAAACCAGAGGAGGGTTCATCCCGATTCGGTGATGGCCAAGGACTTCCACGGTATCGAAGAGGAGGTGTTCCTGAGCCTGCCTGCCCAGCTGGGAAGCGGAGGGATATTGGGCGTTGCCAGCATCCACTTGACAGAGGAAGAAACCCATTGTCTCAAGATGTCAGCGGACGCCATCTT

Fln Alignment:

AllPine_a_rep_c92301___FRSMIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLDKQEIPYEKEHLKAIHQSVVNSAYEVIKLKGYTSWAIGYSTANLVKSVIRNQRRVHPDSVMAKDFHGIEEEVFLSLPAQLGSGGILGVASIHLTEEETHCLKMSADAI
D5AAB2________________FRSLIADHLDVNAQDVQAYIIGEHGDSSVALWSSISVGGVPVLSLLEKQQIPYEKETLETIHSAVINSAYEVIRLKGYTSWAIGYSAASLVKSIVRNQKRIHPVSVLAKGFHGIEDDVFLSLPAQLGTGGVLGVANIPLTGEETQRLNMSAKAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain