SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135662

Length: 458 nt

UniGene Fasta

>sp_v3.0_unigene135662
GTACCCGGTCCAGCACATCGCCATGGTATGGGCCGGACCGGGTACTCTACTTGGGGCCTTTTTCCGGAGAGCCACCATCCTACTTGACTGGTGAGTTCCCCGGTGACTACGGGTGGGACACCGCGGGGCTTTCGGCAGATCCAGAGACTTTTGCGAAGAACAGAGAGCTGGAAGTAATCCACTGCCGGTGGGCAATGCTGGGCGCTCTGGGTTGCGTTTTCCCGGAGCTTCTGGCGAGAAATGGAGTAAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGATCTCAGATTTTCAGCGAGGGAGGGCTTGACTACCTGGGAAACCCTAGCTTGGTTCACGCGCAGAGCATTCTTGCTGACGACCCTGACGCTTTCGCGGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGTTGGCCATGTTTTCCATGTTCGGATTCTTCGTGCAGGCCATTGTCACT

Ace file of the UniGene sp_v3.0_unigene135662

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chlorophyll a-b binding protein 2 n=1 Tax=Zea mays RepID=B6SZ08_MAIZE	-	-	0.0	85%
FL-Next	tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	0.0	77%
Sma3	LHCP	-	-	1.092e-30	-

Source	Gene names
Sma3	AB165; AB180; AB80; AB96; ABC; At1g29910; At1g29910/F1N18.5; At1g29920; At2g05070; At2g05070/F1O13.20; At2g05100; At2g34420; At2g34420/T31E10.24; At2g34430; At3g27690; CAB; CAB-151; CAB-M9; CAB1; CAB13; CAB16; CAB1B; CAB1R; CAB2; CAB21; CAB215; CAB22L; CA

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	photosystem I	GO:0009522	Cellular Component	-
Sma3	photosystem II	GO:0009523	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	chlorophyll binding	GO:0016168	Molecular Function	-
Sma3	photosynthesis, light harvesting	GO:0009765	Biological Process	-
Sma3	protein-chromophore linkage	GO:0018298	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G34430.1	LHB1B1, LHCB1.4 light-harvesting chlorophyll-protein complex II subunit B1 chr2:14524818-14525618 FORWARD LENGTH=266	72%
RefSeq	Arabidopsis thaliana	NP_565787.1	light-harvesting complex II chlorophyll a/b binding protein 1 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002302798.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q41234

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 152 - 274

Fln protein: TRSSTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVT

Protein Length: 153

Fln nts: GTACCCGGTCCAGCACATCGCCATGGTATGGGCCGGACCGGGTACTCTACTTGGGGCCTTTTTCCGGAGAGCCACCATCCTACTTGACTGGTGAGTTCCCCGGTGACTACGGGTGGGACACCGCGGGGCTTTCGGCAGATCCAGAGACTTTTGCGAAGAACAGAGAGCTGGAAGTAATCCACTGCCGGTGGGCAATGCTGGGCGCTCTGGGTTGCGTTTTCCCGGAGCTTCTGGCGAGAAATGGAGTAAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGATCTCAGATTTTCAGCGAGGGAGGGCTTGACTACCTGGGAAACCCTAGCTTGGTTCACGCGCAGAGCATTCTTGCTGACGACCCTGACGCTTTCGCGGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGTTGGCCATGTTTTCCATGTTCGGATTCTTCGTGCAGGCCATTGTCACT

Fln Alignment:

AllPine_a_rep_c92197___SSTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI-----------------------------------------LADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVT
Q41234________________ASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain