SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135629

Length: 420 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene135629
CAAAGCTTTGGTGTTCGAGTTTATGCCTAAGGGAAGTTTAGAGAATCATTTGTATCCTGGTATAGATGATAACAATGATGAAGATTTGTGTGAATTGAGGTTGAAAACACGATTAGACATTGCCATAGATGTGGCCCATGCCATGGAATATCTTCACCATGATTCTTTTGTGCAACTAGTTCATTGTGATATAAAACCCAGCAATGTACTCTTGGATGAAGACATGTCAGACCATGTCACAGATTTTGGTATTGCAAGGCTAATTGGTGCAACCTCAAATGATTCGCTTACATCATCACTTGCTTTGAAAGGATCAATGGGTTACATTGCCCCAGGTATGACTTTTAAAACAATACTTTCACTTGTCTTTTCTCAGTAATAATTTTGTATTATATGGATTGGTTAAGTAAATCTTGATGA

Ace file of the UniGene sp_v3.0_unigene135629 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase [Medicago truncatula]	-	-	2.0e-25	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Kinase-like protein	-	-	3.584e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	4.979e-10	-

Source	Gene names
Sma3	B1047H05.12; B1047H05.53; B1307A11.12; GSVIVT00002249001; GSVIVT00003507001; GSVIVT00003509001; GSVIVT00004217001; GSVIVT00005204001; GSVIVT00014914001; GSVIVT00017170001; GSVIVT00018759001; GSVIVT00021362001; GSVIVT00022825001; GSVIVT00022830001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	proton-transporting V-type ATPase, V0 domain	GO:0033179	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Carotenoid oxygenase	IPR004294	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Copine	IPR010734	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G24130.1	Leucine-rich receptor-like protein kinase family protein chr2:10258148-10261220 FORWARD LENGTH=980	6.0e-25	49%
RefSeq	Arabidopsis thaliana	NP_179990.1	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	8.0e-25	49%
RefSeq	Populus trichocarpa	XP_002337529.1	predicted protein, partial [Populus trichocarpa]	4.0e-32	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 197 aas, your sequence is shorter than subject: 126 - 656

Fln protein: KALVFEFMPKGSLENHLYPGIDDNNDEDLCELRLKTRLDIAIDVAHAMEYLHHDSFVQLVHCDIKPSNVLLDEDMSDHVTDFGIARLIGATSNDSLTSSLALKGSMGYIAPGMTFKTILSLVFSQ*

Protein Length: 127

Fln nts: CAAAGCTTTGGTGTTCGAGTTTATGCCTAAGGGAAGTTTAGAGAATCATTTGTATCCTGGTATAGATGATAACAATGATGAAGATTTGTGTGAATTGAGGTTGAAAACACGATTAGACATTGCCATAGATGTGGCCCATGCCATGGAATATCTTCACCATGATTCTTTTGTGCAACTAGTTCATTGTGATATAAAACCCAGCAATGTACTCTTGGATGAAGACATGTCAGACCATGTCACAGATTTTGGTATTGCAAGGCTAATTGGTGCAACCTCAAATGATTCGCTTACATCATCACTTGCTTTGAAAGGATCAATGGGTTACATTGCCCCAGGTATGACTTTTAAAACAATACTTTCACTTGTCTTTTCTCAGTAATAATTTTGTATTATATGGATTGGTTAAGTAAATCTTGATGA

Fln Alignment:

AllPine_a_rep_c92141___KALVFEFMPKGSLENHLYPGIDDNNDEDLCELRLKTRLDIAIDVAHAMEYLHHDSFVQLVHCDIKPSNVLLDEDMSDHVTDFGIARLIGATSNDSLTSSLALKGSMGYIAP
C0PRI9________________RLLVYEFVPNDTLEHHLHGKGQPN-------MEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKL---ASEDFTHVSTRVMGTFGYLAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain