SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135541

Length: 243 nt

UniGene Fasta

>sp_v3.0_unigene135541
CGTCGTGACCTTGGCTGTCACTCAGGTGCTCACCGATGTCCTATGGCCAAAATGCCATAGCTGTGAATGAATTCCTGGCTCCCAGATGGGACAAACCTGTCAGTAAAAGCTCCAATGAAACAATTGGACGTGCAGTATTAGAATCTCGTGGAATATTTCCTGAAGATAAATTTTATGGATTGGCATTGGAGCATCAATCGGGTTCTCTGTACTTTTCAACATTCTCTTCATTGTTGCTTTAGC

Ace file of the UniGene sp_v3.0_unigene135541

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8RLA2_SELML	-	-	8.0e-12	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	Gene names
Sma3	LOC_Os01g42350; LOC_Os01g42370; Os01g0609000; Os01g0609200; OsI_02806; OsI_02808; OsJ_02558; OsJ_02559; P0410E03.5; P0410E03.7; PDR1; PDR10; PDR11; PDR2;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABN7

Fln msg: Overlapping hits, possible frame ERROR between 188 and 182, Distance to subject end: 148 aas, your sequence is shorter than subject: 69 - 207

Fln protein: MSYGQNAIAVNEFLAPRWDKPVSKSSNETIGRAVLESRGIFPEDKFYGxxxxASIGFSVLFNILFIVAL

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGCTCACCG_-_ATGTCCTATGGCCAAAATGCCATAGCTGTGAATGAATTCCTGGCTCCCAGATGGGACAAACCTGTCAGTAAAAGCTCCAATGAAACAATTGGACGTGCAGTATTAGAATCTCGTGGAATATTTCCTGAAGATAAATTTTATGGAxxxxxxxxxxxxGCATCAATCGGGTTCTCTGTACTTTTCAACATTCTCTTCATTGTTGCTTTAGC

Fln Alignment:

AllPine_a_rep_c92010___MSYGQNAIAVNEFLAPRWDKPVSKSSNETIGRAVLESRGIFPEDKFYGLxxGASIGFSVLFNILFIVAL
D5ABN7________________MSYGQNTI-----------EPISNSSSETVGRAVLESRGLFAEAKFYWIxxGALIGFCVLFNVLYTVAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain