SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135414

Length: 422 nt

UniGene Fasta

>sp_v3.0_unigene135414
CGTCGTGACCTTGGCTGTCACTCAATCTCAGTATTTGAACGTCGAGGGATATCATCTCTGTGTGTGAGATAGATGTGAGACATGGCTGGGAATGGGGTGGTGAAGGCTGTGTTTGCGTTTGTGCTTGTGGCTGCAGTGATGATTGCGTCGGCTGTAGTCAGAACGGAGGGTGCGATATCACGCAACAATGTCGCGAGTGCCTTCACTCCATGCGGTGGATATCTGATGGGGAATGCGATCACCTCTGCTCCGGGTTGTTGTCCTTCCCTTAAGGCTTTAGACTCTCAAGTTAGGGACACCCCTGATAGGCAGGCTGTTTGTAACTGCCTCAAGGATCAGGCAAAGACTTTTGGGGTCAATTTAGGTAAGGTTGCTAATCTGCCCACTCTGTGCAAGATCAACGACATCAACGTGCCCTTCGC

Ace file of the UniGene sp_v3.0_unigene135414

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-specific lipid-transfer protein n=4 Tax=Picea sitchensis RepID=A9NJW4_PICSI	-	-	1.0e-32	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%

Source	Gene names
Sma3	LTP1;

Source	GOs	Term	Type	e value	Identity
Sma3	lipid binding	GO:0008289	Molecular Function	0.0	-
Sma3	lipid transport	GO:0006869	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3		IPR003612	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002305878.1	predicted protein [Populus trichocarpa]	3.0e-16	47%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NJW5

Fln msg: STOP codon was not found. Distance to subject end: 9 aas,

Fln protein: MAGNGVVKAVFAFVLVAAVMIASAVVRTEGAISRNNVASAFTPCGGYLMGNAITSAPGCCPSLKALDSQVRDTPDRQAVCNCLKDQAKTFGVNLGKVANLPTLCKINDINVPF

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCAGTATTTGAACGTCGAGGGATATCATCTCTGTGTGTGAGATAGATGTGAGAC_-_ATGGCTGGGAATGGGGTGGTGAAGGCTGTGTTTGCGTTTGTGCTTGTGGCTGCAGTGATGATTGCGTCGGCTGTAGTCAGAACGGAGGGTGCGATATCACGCAACAATGTCGCGAGTGCCTTCACTCCATGCGGTGGATATCTGATGGGGAATGCGATCACCTCTGCTCCGGGTTGTTGTCCTTCCCTTAAGGCTTTAGACTCTCAAGTTAGGGACACCCCTGATAGGCAGGCTGTTTGTAACTGCCTCAAGGATCAGGCAAAGACTTTTGGGGTCAATTTAGGTAAGGTTGCTAATCTGCCCACTCTGTGCAAGATCAACGACATCAACGTGCCCTTCGC

Fln Alignment:

AllPine_a_rep_c91820___MAGNGXXXXXXXXXXXXXXMIASAVVRTEGAISRNNVASAFTPCGGYLMGNAITSAPGCCPSLKALDSQVRDTPDRQAVCNCLKDQAKTFGVNLGKVANLPTLCKINDINVP
A9NJW5________________MAVNGMVKAVFLVGLVVTVMTAWGVVRTEGAISCNQVVSALTPCAGYLIGNAATPAPACCPAIKGLDSQVKATPDRQAVCNCLKNQATSFGVKLGKAANLPGLCKVTDINVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain