SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135221

Length: 230 nt

UniGene Fasta

>sp_v3.0_unigene135221
CGTCGTGACCTTGGCTGTCACTCATGTTTTTCTTACAGGGGACAGATCACACCCACAAACACCAAAAATTCATTCTTTGTTGCAAAAATTATCCATGCGAATGAAAGAGTCAGGATATGTACCCGACAGAGACTTTGTACTGCATGACATTGCGGATGAGAAGAAGGAGCGTTTGCTCTACTACCACAGTGAGAAGATAGCAATTGCTTTTGGTCTGATCAACACACCCA

Ace file of the UniGene sp_v3.0_unigene135221

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB	-	-	1.0e-19	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	At2g27610; F10A12.28; F15K20.29; GSVIVT00003383001; GSVIVT00006516001; GSVIVT00013634001; GSVIVT00018789001; GSVIVT00020655001; GSVIVT00024231001; GSVIVT00024670001; GSVIVT00028372001; GSVIVT00032298001; GSVIVT00037428001; GSVIVT00037937001; LOC_Os03g1323

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27610.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr2:11783927-11786533 REVERSE LENGTH=868	3.0e-19	57%
RefSeq	Arabidopsis thaliana	NP_180329.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	4.0e-19	57%
RefSeq	Populus trichocarpa	XP_002324099.1	predicted protein [Populus trichocarpa]	6.0e-25	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 76 - 246

Fln protein: VVTLAVTHVFLTGDRSHPQTPKIHSLLQKLSMRMKESGYVPDRDFVLHDIADEKKERLLYYHSEKIAIAFGLINTP

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTTTCTTACAGGGGACAGATCACACCCACAAACACCAAAAATTCATTCTTTGTTGCAAAAATTATCCATGCGAATGAAAGAGTCAGGATATGTACCCGACAGAGACTTTGTACTGCATGACATTGCGGATGAGAAGAAGGAGCGTTTGCTCTACTACCACAGTGAGAAGATAGCAATTGCTTTTGGTCTGATCAACACACCCA

Fln Alignment:

AllPine_a_c91548___HVFLTGDRSHPQTPKIHSLLQKLSMRMKESGYVPDRDFVLHDIADEKKERLLYYHSEKIAIAFGLINT
D5AAE0________________HTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLIST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain