SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135207

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene135207
CGTCGTGACCTTGGCTGTCACTCAAACTTTTAGGGTACAGGAACCAAGAACAGGTTTTCTCTAAAGAAGACTTTCCACCTTCTCCTTCTGATCATCAAAGTATATTGGTTTTGTTATCGAGTCGCTGTGTGTTAAAGGGGACAGTCTGTGAGCGTTCACAACTCTTTCGCATCAAGTATTATGGCAGTTTTGATAAGCCACTAGGAAGGTACCTCCGGGATGA

Ace file of the UniGene sp_v3.0_unigene135207

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] dbj\|BAB01033.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE75496.1\| 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana]	-	-	5.0e-20	81%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	82%
Sma3	Fyve finger-containing phosphoinositide kinase, fyv1, putative	-	-	2.253e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.1.15-	-	9.011e-12	-

Source	Gene names
Sma3	AT4g33240; At1g71010; At3g14270; At4g33240; F15H11.20; F4I10.170; GSVIVT00016365001; GSVIVT00030472001; GSVIVT00034003001; LOC_Os03g28140; MtrDRAFT_AC183502g30v2; OJ1005_H01.27; OSJNBa0087G11.3; Os03g0399500; Os03g28140; Os08g0428900; OsI_29312; OsI_29434

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	phosphatidylinositol phosphate kinase activity	GO:0016307	Molecular Function	-
Sma3	cellular protein metabolic process	GO:0044267	Biological Process	-
Sma3	phosphatidylinositol metabolic process	GO:0046488	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Phosphatidylinositol-4-phosphate 5-kinase, core	IPR002498	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G14270.1	FAB1B phosphatidylinositol-4-phosphate 5-kinase family protein chr3:4754624-4761185 FORWARD LENGTH=1791	3.0e-25	81%
RefSeq	Arabidopsis thaliana	NP_188044.1	1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana]	4.0e-25	81%
RefSeq	Populus trichocarpa	XP_002303329.1	predicted protein, partial [Populus trichocarpa]	1.0e-25	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1MK68

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 901 aas, your sequence is shorter than subject: 73 - 1743

Fln protein: S*PWLSLKLLGYRNQEQVFSKEDFPPSPSDHQSILVLLSSRCVLKGTVCERSQLFRIKYYGSFDKPLGRYLRD

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTTTTAGGGTACAGGAACCAAGAACAGGTTTTCTCTAAAGAAGACTTTCCACCTTCTCCTTCTGATCATCAAAGTATATTGGTTTTGTTATCGAGTCGCTGTGTGTTAAAGGGGACAGTCTGTGAGCGTTCACAACTCTTTCGCATCAAGTATTATGGCAGTTTTGATAAGCCACTAGGAAGGTACCTCCGGGATGA

Fln Alignment:

AllPine_a_rep_c91532___LGYRNQEQVFSKEDFPPSPSDHQSILVLLSSRCVLKGTVCERSQLFRIKYYGSFDKPLGRYLRD
I1MK68________________LGITNEEPVLIKEEFPPSPSDHQSILVSLSSRCVWKGTVCERSHLFRIKYYGSFDKPLGRFLRD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain