SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene134991

Length: 309 nt

UniGene Fasta

>sp_v3.0_unigene134991
CGTCGTGACCTTGGCTGTCACTCAAACAGTTGACCAGATTAAAAGTCTAGGAGCAAAGGCTGGAGTTGTCTTGAACCCTGGGACGCCACTCAGTGCAATAGAATATGTACTTGAATCTGTTGATCTGGTATTGATTATGTCAGTCAACCCTGGGTTTGGTGGGCAGAGCTTTATTGAGAGTCAAGTAAAGAAAATTGCTGATTGAGAAAACTATGTGAAGAGAAGGGAGTGAACCCCTGGATTGAGGTTGATGGTGGAGTCAGCCCCAAAAATGCCTACAAGGTCATTGAAGCTGGCGCGAATGCGCTT

Ace file of the UniGene sp_v3.0_unigene134991

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D-ribulose-5-phosphate-3-epimerase n=2 Tax=Arabidopsis RepID=Q9SAU2_ARATH	-	-	3.0e-38	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Pentose-5-phosphate 3-epimerase	-	-	3.06e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribulose-phosphate 3-epimerase.	EC:5.1.3.1	-	7.764e-25	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose phosphate pathway	00030	7.764e-25	%
Sma3	Pentose and glucuronate interconversions	00040	7.764e-25	%
Sma3	Carbon fixation in photosynthetic organisms	00710	7.764e-25	%
Sma3	Metabolic pathways	01100	7.764e-25	%
Sma3	Biosynthesis of secondary metabolites	01110	7.764e-25	%

Source	Gene names
Sma3	AT5G61410; At5g61410; CHLREDRAFT_135614; GSVIVT00016307001; LOC_Os03g07300; MICPUCDRAFT_47473; MICPUN_104768; OSTLU_32100; Os03g0169100; OsI_10180; OsJ_09567; Ot06g01840; PHYPADRAFT_111326; PHYPADRAFT_122169; PHYPADRAFT_207297; POPTRDRAFT_744163; RCOM_012

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ribulose-phosphate 3-epimerase activity	GO:0004750	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	tRNA wobble uridine modification	GO:0002098	Biological Process	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	pentose-phosphate shunt	GO:0006098	Biological Process	-
Sma3	reductive pentose-phosphate cycle	GO:0019253	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribulose-phosphate 3-epimerase	IPR000056	-	-
Sma3	Glucose-inhibited division protein A-related	IPR002218	-	-
Sma3	Glucose-inhibited division protein A	IPR004416	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G61410.1	RPE, EMB2728 D-ribulose-5-phosphate-3-epimerase chr5:24684085-24685836 REVERSE LENGTH=281	9.99995e-41	86%
RefSeq	Arabidopsis thaliana	NP_200949.1	D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]	2.0e-40	86%
RefSeq	Populus trichocarpa	XP_002330128.1	predicted protein [Populus trichocarpa]	5.0e-38	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NP17

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 202 and 202, Distance to subject end: 30 aas, your sequence is shorter than subject: 103 - 292

Fln protein: VVTLAVTQTVDQIKSLGAKAGVVLNPGTPLSAIEYVLESVDLVLIMSVNPGFGGQSFIESQVKKIAxxRKLCEEKGVNPWIEVDGGVSPKNAYKVIEAGANAL

Protein Length: 104

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACAGTTGACCAGATTAAAAGTCTAGGAGCAAAGGCTGGAGTTGTCTTGAACCCTGGGACGCCACTCAGTGCAATAGAATATGTACTTGAATCTGTTGATCTGGTATTGATTATGTCAGTCAACCCTGGGTTTGGTGGGCAGAGCTTTATTGAGAGTCAAGTAAAGAAAATTGCTxxxxxxAGAAAACTATGTGAAGAGAAGGGAGTGAACCCCTGGATTGAGGTTGATGGTGGAGTCAGCCCCAAAAATGCCTACAAGGTCATTGAAGCTGGCGCGAATGCGCTT

Fln Alignment:

AllPine_a_rep_c91229___TLAVTQTVDQIKSLGAKAGVVLNPGTPLSAIEYVLESVDLVLIMSVNPGFGGQSFIESQVKKIADLRKLCEEKGVNPWIEVDGGVSPKNAYKVIEAGANAL
A9NP17________________TIHLHRTVNQIKSLGAKAGVVLNPATPLSCIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCAERGVNPWIEVDGGVTPSNAYKVIEAGANAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain