SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene134560

Length: 245 nt

UniGene Fasta

>sp_v3.0_unigene134560
CGTCGTGACCTTGGCTGTCACTCAAATGTGCAGGGGAATATCTCTACTATTAATATATTGATTGGTATTTTTGGGACAGAGGAGCATATTGGAGAGGCCGAGAAGTGTTGCAAATTGGCCCAGAAGTGGAAGCTCAAGTTCAATGCCTATACTTACAAGTCTCTCTTGCAGGCCTATCTGAGGGCGGGTAATGTCGACAAGGCTGTACAGACTTATGGGCATATGCGGCGATCCGGATACAAGTT

Ace file of the UniGene sp_v3.0_unigene134560

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABA Overly-Sensitive 5 protein [Arabidopsis thaliana] sp\|Q9ZU27.1\|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g51965, mitochondrial; Flags: Precursor gb\|AAD12672.1\| Similar to gi\|3004555 F19F24.14 salt inducible protein homolo	-	-	6.0e-15	54%
FL-Next	sp=Pentatricopeptide repeat-containing protein At1g51965, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%

Source	Gene names
Sma3	GSVIVT00034279001; VITISV_000613;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G51965.1	ABO5 ABA Overly-Sensitive 5 chr1:19312078-19314145 REVERSE LENGTH=650	2.0e-19	54%
RefSeq	Arabidopsis thaliana	NP_683419.1	ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]	2.0e-19	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZU27

Fln msg: Distance to subject end: 414 aas, your sequence is shorter than subject: 81 - 650

Fln protein: RRDLGCHSNVQGNISTINILIGIFGTEEHIGEAEKCCKLAQKWKLKFNAYTYKSLLQAYLRAGNVDKAVQTYGHMRRSGYK

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGTGCAGGGGAATATCTCTACTATTAATATATTGATTGGTATTTTTGGGACAGAGGAGCATATTGGAGAGGCCGAGAAGTGTTGCAAATTGGCCCAGAAGTGGAAGCTCAAGTTCAATGCCTATACTTACAAGTCTCTCTTGCAGGCCTATCTGAGGGCGGGTAATGTCGACAAGGCTGTACAGACTTATGGGCATATGCGGCGATCCGGATACAAGTT

Fln Alignment:

AllPine_a_rep_c90629___SNVQGNISTINILIGIFGTEEHIGEAEKCCKLAQKWKLKFNAYTYKSLLQAYLRAGNVDKAVQTYGHMRRSGYK
Q9ZU27________________SNVHGNISTVNILIGFFGNTEDL---QMCLRLVKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain