SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene134536

Length: 316 nt

UniGene Fasta

>sp_v3.0_unigene134536
CGTCGTGACCTTGGCTGTCACTCATTTTCGATCTCTAGCATCTGATTTTTCCAAGCGTGAATTTGTGCCATTTGCATCTGAATGGGATAAGCGGGAATATTTTCCAGTTGAAGTGCTTCGGAAGGCAGCATCCTTGGGTTTTGGTGGGCTCTTCTGCAGTCAAGATGTTGGTGGTTCTGAATTGTCCAGGGCTGATGGTGCAGTGATATTGAGGCACTAGCATATGGTGACGTAAGCACCACCGCATATCTTTCTGTACACAACATGTGTTGTTCCATAATTGACAGATATGGTACAGAGGATCAGAGAAAACTAT

Ace file of the UniGene sp_v3.0_unigene134536

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	acyl-CoA dehydrogenase [Dictyostelium discoideum AX4] sp\|Q54IM8.1\|ACAD8_DICDI RecName: Full=Isobutyryl-CoA dehydrogenase, mitochondrial; AltName: Full=Acyl-CoA dehydrogenase family member 8 homolog; Flags: Precursor gb\|EAL63127.1\| acyl-CoA dehydrogenase [	-	-	4.0e-25	54%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	67%

Source	Gene names
Sma3	PHYPADRAFT_118542;

Source	GOs	Term	Type	Identity
Sma3	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	-
Sma3		IPR013764	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8QMY6

Fln msg: Separated hits, possible frame ERROR between 208 and 211, Distance to subject end: 282 aas, your sequence is shorter than subject: 105 - 429

Fln protein: VVTLAVTHFRSLASDFSKREFVPFASEWDKREYFPVEVLRKAASLGFGGLFCSQDVGGSELSRADGAVxxEALAYGDVSTTAYLSVHNMCCSIIDRYGTEDQRKL

Protein Length: 106

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCGATCTCTAGCATCTGATTTTTCCAAGCGTGAATTTGTGCCATTTGCATCTGAATGGGATAAGCGGGAATATTTTCCAGTTGAAGTGCTTCGGAAGGCAGCATCCTTGGGTTTTGGTGGGCTCTTCTGCAGTCAAGATGTTGGTGGTTCTGAATTGTCCAGGGCTGATGGTGCAGTGATxxxTGAGGCACTAGCATATGGTGACGTAAGCACCACCGCATATCTTTCTGTACACAACATGTGTTGTTCCATAATTGACAGATATGGTACAGAGGATCAGAGAAAACTAT

Fln Alignment:

AllPine_a_rep_c90592___HFRSLASDFSKREFVPFASEWDKREYFPVEVLRKAASLGFGGLFCSQDVGGSELSRADGAVIxEALAYGDVSTTAYLSVHNMCCSIIDRYGTEDQR
D8QMY6________________HFRALATDFAKKELLPNGAQWDCDKYFPVEVLRKAAGLGFGGMFCAEDVGGSRLNRVDGAVIxEALAYGDVSTTAYLTIHNMCCSLIDRYGNDQQR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain