SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene134513

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene134513
CGTCGTGACCTTGGCTGTCACTCAGTTCTGGAGATGCAAATTTTCACATCCATTGTTGCTACTGTGGTATGCATAATTGGATTGTTTGTTAGTGGAGAGTTCAGAGATATGAAAAAAGAGGCTGAGAATTTCACAACCGGGAAAGTTGCCTATTATATGACATTGATATGGTCTGCGATAGGTTGGCAGGTTTCTTCTGTTGGTGGAGTGGGTTTGATTA

Ace file of the UniGene sp_v3.0_unigene134513

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	purine permease 11 [Arabidopsis thaliana] gb\|AEE32046.1\| purine permease 11 [Arabidopsis thaliana]	-	-	1.0e-14	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	Gene names
Sma3	At1g44750; GSVIVT00003405001; GSVIVT00027937001; POPTRDRAFT_589957; POPTRDRAFT_591810; PUP11; T12C22.2; VITISV_007596; VITISV_008604; VITISV_020513;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	purine base transmembrane transporter activity	GO:0005345	Molecular Function	-
Sma3	purine base transport	GO:0006863	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Nucleotide-sugar transporter	IPR007271	-	-
Sma3	Cas1p 10 TM acyl transferase domain	IPR012419	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G44750.1	ATPUP11, PUP11 purine permease 11 chr1:16892688-16895168 FORWARD LENGTH=379	9.0e-20	58%
RefSeq	Arabidopsis thaliana	NP_001031147.1	purine permease 11 [Arabidopsis thaliana]	5.0e-20	58%
RefSeq	Populus trichocarpa	XP_002326880.1	predicted protein [Populus trichocarpa]	1.0e-19	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLF0

Fln msg: Distance to subject end: 70 aas, your sequence is shorter than subject: 73 - 367

Fln protein: RRDLGCHSVLEMQIFTSIVATVVCIIGLFVSGEFRDMKKEAENFTTGKVAYYMTLIWSAIGWQVSSVGGVGLI

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCTGGAGATGCAAATTTTCACATCCATTGTTGCTACTGTGGTATGCATAATTGGATTGTTTGTTAGTGGAGAGTTCAGAGATATGAAAAAAGAGGCTGAGAATTTCACAACCGGGAAAGTTGCCTATTATATGACATTGATATGGTCTGCGATAGGTTGGCAGGTTTCTTCTGTTGGTGGAGTGGGTTTGATTA

Fln Alignment:

AllPine_a_rep_c90558___VLEMQIFTSIVATVVCIIGLFVSGEFRDMKKEAENFTTGKVAYYMTLIWSAIGWQVSSVGGVGLI
B8LLF0________________VLEMQIYTSLVATVVCIVGLFVSGEFRDIKEEAHSFTRGKVAYYMTLIWSAIGWQVCSVGVVGLI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain