SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene134443

Length: 283 nt

UniGene Fasta

>sp_v3.0_unigene134443
TTGGTAGTTGGTTAGTCCTTCTAGTCGGTTCGTCTATTATTTATTGTTGCAAGGTTCTGTCGTGCGCTTGGCTGGACTTGTGTTTGCCACAGCATTCAGTCCGTTGGTGATGATAATCGTGGCAGTCATGGGATCTGTTATTCTCTCTGAAAATATTTATTTGGGCAGTGTGCTGGGAGGAGTTATGATCGCAGTCGGGCTATACGCTGTTCTGTGGGGAAAATTGAAGGACAGCAAAACCTCGACAGATGAAAATCATTCGGAAGCGCTTCCCAGCTCTGAA

Ace file of the UniGene sp_v3.0_unigene134443

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nodulin-like protein (Fragment) n=1 Tax=Plantago major RepID=Q5ZFS6_PLAMJ	-	-	4.0e-18	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Nodulin-like protein	-	-	3.677e-14	-

Source	Gene names
Sma3	At2g37460; At2g37460/F3G5.25; GSVIVT00002051001; GSVIVT00015368001; GSVIVT00023303001; LOC_Os10g09710; NLP; OJ1767_D02.10; OSJNBa0051J07.8; OSJNBa0088I06.20; OSJNBb0014K18.13; Os01g0803300; Os02g0768300; Os05g0409500; Os05g0493800; Os06g0210000; OsI_04113

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G07050.1	nodulin MtN21 /EamA-like transporter family protein chr5:2191533-2193416 REVERSE LENGTH=402	6.0e-22	56%
RefSeq	Arabidopsis thaliana	NP_196322.3	nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]	8.0e-22	56%
RefSeq	Populus trichocarpa	XP_002308862.1	predicted protein, partial [Populus trichocarpa]	2.0e-23	56%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM84

Fln msg: Distance to subject end: 44 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 92 - 118

Fln protein: LVSPSSRFVYYLLLQGSVVRLAGLVFATAFSPLVMIIVAVMGSVILSENIYLGSVLGGVMIAVGLYAVLWGKLKDSKTSTDENHSEALPSSE

Protein Length: 93

Fln nts: TTGGTAGTTGGTTAGTCCTTCTAGTCGGTTCGTCTATTATTTATTGTTGCAAGGTTCTGTCGTGCGCTTGGCTGGACTTGTGTTTGCCACAGCATTCAGTCCGTTGGTGATGATAATCGTGGCAGTCATGGGATCTGTTATTCTCTCTGAAAATATTTATTTGGGCAGTGTGCTGGGAGGAGTTATGATCGCAGTCGGGCTATACGCTGTTCTGTGGGGAAAATTGAAGGACAGCAAAACCTCGACAGATGAAAATCATTCGGAAGCGCTTCCCAGCTCTGAA

Fln Alignment:

AllPine_a_rep_c90448___VRLAGLVFATAFSPLVMIIVAVMGSVILSENIYLGSVLGGVMIAVGLYAVLWGKLKDSKTSTDENHSEALPSSE
B8LM84________________MRVKGPVFATAFSPLMMILVAVMGSIILSERIYLGSVLGGLMIAIGLYAVLWGKVKDSKISTDKNGSEVLSNSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain