SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133912

Length: 419 nt

UniGene Fasta

>sp_v3.0_unigene133912
CGTCGTGACCTTGGCTGTCACTCATGAGTTCAGGAATTTAGATTATCAGAGAATCTATGACAACATGCAGAAGCCCGCATTCATTTTTGATGGTCGCAACATTGTCAATGTGGAACAGCTGAGGAAGATTGGTTTCATTGTTTATTCAATTGGCAAACCTCTCGACCCTTGGGTTAAGGATTTGCCTATATCAGCATAGTTTGGTCCATTATGTGCAGATGGAGCAGCAGATGAAGGGTTCTAGGATATTTTGGTCGGTTGGTGCAAATTGAGAGTATTTTCTGTCATTAGGCTCTGGTAATATTTTAAATTATTAGAATTGTAGAGTGATCTTTGAATTTGTCCAACTTTTCAGAGTGGATGCTGAAACTCCTACTTCCCGGAATTTTATATTACATTAGAAGGATTCTTTTCGGCTG

Ace file of the UniGene sp_v3.0_unigene133912

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucose dehydrogenase [Cinnamomum osmophloeum]	-	-	2.0e-21	73%
FL-Next	sp=UDP-glucose 6-dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	UDP-glucose dehydrogenase	-	-	1.576e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	UDP-glucose 6-dehydrogenase.	EC:1.1.1.22	-	2.346e-25	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	2.346e-25	%
Sma3	Ascorbate and aldarate metabolism	00053	2.346e-25	%
Sma3	Starch and sucrose metabolism	00500	2.346e-25	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	2.346e-25	%
Sma3	Metabolic pathways	01100	2.346e-25	%
Sma3	Biosynthesis of secondary metabolites	01110	2.346e-25	%

Source	Gene names
Sma3	At1g26570; At3g01010; At3g29360; At5g15490; At5g39320; GSVIVT00016253001; GSVIVT00021053001; GSVIVT00030060001; K3K3.170; LOC_Os03g31210; LOC_Os03g40720; LOC_Os03g55070; LOC_Os12g25690; LOC_Os12g25700; MUO10.18; MUO10_6; OSJNBa0004G03.9; OSJNBa0020H02.10;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	UDP-glucose 6-dehydrogenase activity	GO:0003979	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucose/GDP-mannose dehydrogenase, N-terminal	IPR001732	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, dimerisation	IPR014026	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, C-terminal	IPR014027	-	-
Sma3		IPR014028	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Nucleotide sugar dehydrogenase	IPR017476	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G39320.1	UDP-glucose 6-dehydrogenase family protein chr5:15743254-15744696 FORWARD LENGTH=480	3.0e-26	74%
RefSeq	Arabidopsis thaliana	NP_198748.1	putative UDP-glucose 6-dehydrogenase 2 [Arabidopsis thaliana]	3.0e-26	74%
RefSeq	Populus trichocarpa	XP_002306064.1	predicted protein [Populus trichocarpa]	8.0e-25	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ50

Fln msg: your sequence is shorter than subject: 66 - 480

Fln protein: VVTLAVTHEFRNLDYQRIYDNMQKPAFIFDGRNIVNVEQLRKIGFIVYSIGKPLDPWVKDLPISA*

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGAGTTCAGGAATTTAGATTATCAGAGAATCTATGACAACATGCAGAAGCCCGCATTCATTTTTGATGGTCGCAACATTGTCAATGTGGAACAGCTGAGGAAGATTGGTTTCATTGTTTATTCAATTGGCAAACCTCTCGACCCTTGGGTTAAGGATTTGCCTATATCAGCATAG___TTTGGTCCATTATGTGCAGATGGAGCAGCAGATGAAGGGTTCTAGGATATTTTGGTCGGTTGGTGCAAATTGAGAGTATTTTCTGTCATTAGGCTCTGGTAATATTTTAAATTATTAGAATTGTAGAGTGATCTTTGAATTTGTCCAACTTTTCAGAGTGGATGCTGAAACTCCTACTTCCCGGAATTTTATATTACATTAGAAGGATTCTTTTCGGCTG

Fln Alignment:

AllPine_a_c89679___VVTLAVTHEFRNLDYQRIYDNMQKPAFIFDGRNIVNVEQLRKIGFIVYSIGKPLDPWVKDLPISA
B8LQ50________________VCILTEWDEFKTLDYQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSIGKPLDSWVKDLPAAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain