SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133882

Length: 403 nt

UniGene Fasta

>sp_v3.0_unigene133882
ATGGGCAAGTGTTGTGTGTAATCGACTTCATCAAATTGTGTGTAGGCATGGCCAGGTTCAGAGAGCCTCTAGTGCTAGGTCGTGTCCTTGGCTGTTGTCATATGTTCATGCCAAGTGTTAACCTCACTGTGGCCTATGGTAGCAGGCAGGTTAACAATGGCTGCGAGATCAAGCCTTCTGCGATCTCCTCTCCCCCACGTGTCGACGTTGGAGGGGACGATTTACGAACCTGCTACACTTTGGTTATGACCGATCCAGATGCTCCCAGTCCAAGCGATCCAACACTGCGCGAGTATTTGCACTGATCTCAAAGGCTTTGTTAATTTGAAAGCGGTTTGCCTGATTTGAAAGCTGGTTTTTAACAGGCAACCGTTTGGAGTCTGGTTTTCTATGACAGTCCATT

Ace file of the UniGene sp_v3.0_unigene133882

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	terminal flower-like protein [Picea abies] gb\|ADE77648.1\| unknown [Picea sitchensis]	-	-	2.0e-30	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Flowering locus T	-	-	3.179e-26	-

Source	Gene names
Sma3	At1g18100; At1g65480; At5g03840; At5g62040; BFT; BNTFL1-1; BNTFL1-2; BNTFL1-3; BRTFL1-1; BRTFL1-2; CET1; CET4; CiFT; CiFT2; CiFT3; CoTFL1-2; CsFT; CsTFL1-2; CsTFL1LC2; CuMFT1; E12A11; F5I14.3; F8F6_50; FA; FT; FT1; FT2; FT4; FT5; FTA; FTB; FTD; FTL1; FTL2

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	vesicle	GO:0031982	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein targeting to vacuole	GO:0006623	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	inflorescence development	GO:0010229	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-
Sma3	short-day photoperiodism	GO:0048572	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidylethanolamine-binding, conserved site	IPR001858	-	0.0	-
Sma3	Phosphatidylethanolamine-binding protein PEBP	IPR008914	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G65480.1	FT PEBP (phosphatidylethanolamine-binding protein) family protein chr1:24331510-24333689 FORWARD LENGTH=175	1.0e-17	54%
RefSeq	Arabidopsis thaliana	NP_176726.1	protein FLOWERING LOCUS T [Arabidopsis thaliana]	2.0e-17	54%
RefSeq	Populus trichocarpa	XP_002311264.1	predicted protein [Populus trichocarpa]	4.0e-24	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADM9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 53 aas, your sequence is shorter than subject: 86 - 173

Fln protein: MARFREPLVLGRVLGCCHMFMPSVNLTVAYGSRQVNNGCEIKPSAISSPPRVDVGGDDLRTCYTLVMTDPDAPSPSDPTLREYLH*

Protein Length: 87

Fln nts: ATGGGCAAGTGTTGTGTGTAATCGACTTCATCAAATTGTGTGTAGGC_-_ATGGCCAGGTTCAGAGAGCCTCTAGTGCTAGGTCGTGTCCTTGGCTGTTGTCATATGTTCATGCCAAGTGTTAACCTCACTGTGGCCTATGGTAGCAGGCAGGTTAACAATGGCTGCGAGATCAAGCCTTCTGCGATCTCCTCTCCCCCACGTGTCGACGTTGGAGGGGACGATTTACGAACCTGCTACACTTTGGTTATGACCGATCCAGATGCTCCCAGTCCAAGCGATCCAACACTGCGCGAGTATTTGCACTGATCTCAAAGGCTTTGTTAATTTGAAAGCGGTTTGCCTGATTTGAAAGCTGGTTTTTAACAGGCAACCGTTTGGAGTCTGGTTTTCTATGACAGTCCATT

Fln Alignment:

AllPine_a_rep_c89621___MARFREPLVLGRVLG-CCHMFMPSVNLTVAYGSRQVNNGCEIKPSAISSPPRVDVGGDDLRTCYTLVMTXXXXXXXXXXTLREYLH
D5ADM9________________MARFREPLVLGRVIGDVVDMFMPSVNLTVAYGSRQVNNGCEIKPSAISSAPRVDVGGDDLRTCFTLVMTDPDAPSPSDPTLREYLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain