SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133669

Length: 456 nt

UniGene Fasta

>sp_v3.0_unigene133669
CGTCGTGACCTTGGCTGTCAGTGGAATTTGATTCAGATTTAGGTCGATCTGGCTTCACTGTATGCAAATTTAGTTAATATTGATATTAAACAGATTGACTAGGTCGAAGATTATCGAGTTTTGACGCGCAAGTAATTGGAACTCTCAATGGCGTAATCAAGTTCATGGGCACATGCGCTGGTCCAGATATCTCCCTATGCATATTCTGCAGTGGGTATTGGCATCGCGATTGTGGTTTCTGTATTGGGCGCTGCCTGGGGGATATATACAACAGGAAGCAGTCTTATCGGTGCAGCAATTAAGGCTCCGCGTATTACATCCAAAAATCTTATCAGTGTAATTTTCTGTGAAGCTGTGGTCGTATATGGTGTTATTGTGGCAATCATTCTACAGACAAAGCTAGAGAGTGTTCCATCTACAAACATGTTTGCACCAGAGGCAATGCGAGCAGGATTT

Ace file of the UniGene sp_v3.0_unigene133669

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vacuolar ATP synthase proteolipid subunit, putative n=1 Tax=Ricinus communis RepID=B9RK01_RICCO	-	-	3.0e-23	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Vacuolar membrane ATPase subunit c''	-	-	8.439e-09	-

Source	Gene names
Sma3	AT4g32530; ATPvL2; At2g25610; At4g32530; CHLREDRAFT_192558; GSVIVT00001586001; GSVIVT00001750001; GSVIVT00011079001; GSVIVT00018545001; GSVIVT00023853001; GSVIVT00027458001; GSVIVT00032571001; GSVIVT00034535001; L23H3.10; MICPUCDRAFT_52829; MICPUN_58766;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	proton-transporting two-sector ATPase complex, proton-transporting domain	GO:0033177	Cellular Component	-
Sma3	proton-transporting V-type ATPase, V0 domain	GO:0033179	Cellular Component	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	-
Sma3	ATPase, F0/V0 complex, subunit C	IPR002379	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G25610.1	ATPase, F0/V0 complex, subunit C protein chr2:10901585-10902494 REVERSE LENGTH=178	6.0e-28	78%
RefSeq	Arabidopsis thaliana	NP_180132.1	V-type H+-transporting ATPase 21kDa proteolipid subunit [Arabidopsis thaliana]	7.0e-28	78%
RefSeq	Populus trichocarpa	XP_002308639.1	predicted protein [Populus trichocarpa]	1.0e-30	81%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT77

Fln msg: Distance to subject end: 73 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 100 - 176

Fln protein: SSSWAHALVQISPYAYSAVGIGIAIVVSVLGAAWGIYTTGSSLIGAAIKAPRITSKNLISVIFCEAVVVYGVIVAIILQTKLESVPSTNMFAPEAMRAGF

Protein Length: 101

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGAATTTGATTCAGATTTAGGTCGATCTGGCTTCACTGTATGCAAATTTAGTTAATATTGATATTAAACAGATTGACTAGGTCGAAGATTATCGAGTTTTGACGCGCAAGTAATTGGAACTCTCAATGGCGTAATCAAGTTCATGGGCACATGCGCTGGTCCAGATATCTCCCTATGCATATTCTGCAGTGGGTATTGGCATCGCGATTGTGGTTTCTGTATTGGGCGCTGCCTGGGGGATATATACAACAGGAAGCAGTCTTATCGGTGCAGCAATTAAGGCTCCGCGTATTACATCCAAAAATCTTATCAGTGTAATTTTCTGTGAAGCTGTGGTCGTATATGGTGTTATTGTGGCAATCATTCTACAGACAAAGCTAGAGAGTGTTCCATCTACAAACATGTTTGCACCAGAGGCAATGCGAGCAGGATTT

Fln Alignment:

AllPine_a_rep_c89232___MA*SSSWAHALVQISPYAYXXXXXXXXXXXXXXXXXWGIYTTGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPSTNMFAPEAMRAGF
A9NT77________________MAKSSSWAHALVQISPYAYSAVGIGIAIGVSVLGAAWGIYTTGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPSTNMFAPEAMRAGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain