SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133649

Length: 397 nt

UniGene Fasta

>sp_v3.0_unigene133649
GTATTCATCCCGTCTTTGTTCCTCGGAGAGTGGACGAGAATCTGTTATATACCATCGGTTTAGGATTGATCAGCTGCCCAGGGCAGTCTTGTGGAGGTCCAAGCGGTTCAAGATTTGCAGCAAGTATGAATAACATATCATTTGTACTGCCAACATCTTTTTCTAATTCTTCAAGCACAACAACTTGGCAAGAAAGGGGTATTCACCACGGACTTCCCCGACTAACCCTCCCTTGCAGTTTGATTATACTGCTCAAAACATAAGCACAGCCCTGTCGTCGCCGGTGAAAGACACGAGAGTGAAAGTTCTCAAATATAACACGACCGTTCAACTAATTCTTCAAGGAACAAATATCGTTGCTGGTGAAAGCCATCCTATCCATCTTCACGGCCACGAC

Ace file of the UniGene sp_v3.0_unigene133649

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	4.0e-34	73%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	0.0	85%
Sma3	Laccase	-	-	4.272e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	1.206e-19	-

Source	Gene names
Sma3	At2g30210; At5g05390; K18I23.20; LAC12; LAC17; LAC23; LAC3; LOC_Os11g01730; LOC_Os12g01730; Lac2; Lac4; Os11g0108700; Os12g0108000; OsJ_031367; T9D9.2;

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05390.1	LAC12 laccase 12 chr5:1594753-1597042 FORWARD LENGTH=565	1.0e-26	60%
RefSeq	Arabidopsis thaliana	NP_196158.1	laccase 12 [Arabidopsis thaliana]	2.0e-26	60%
RefSeq	Populus trichocarpa	XP_002315130.1	laccase 90d, partial [Populus trichocarpa]	2.0e-22	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9AUI3

Fln msg: Separated hits, possible frame ERROR between 152 and 194, Distance to subject end: 91 aas, your sequence is shorter than subject: 132 - 570

Fln protein: IHPVFVPRRVDENLLYTIGLGLISCPGQSCGGPSGSRFAASMNNISFVLxxxxxxxxxxxxxxxKGYSPRTSPTNPPLQFDYTAQNISTALSSPVKDTRVKVLKYNTTVQLILQGTNIVAGESHPIHLHGHD

Protein Length: 133

Fln nts: GTATTCATCCCGTCTTTGTTCCTCGGAGAGTGGACGAGAATCTGTTATATACCATCGGTTTAGGATTGATCAGCTGCCCAGGGCAGTCTTGTGGAGGTCCAAGCGGTTCAAGATTTGCAGCAAGTATGAATAACATATCATTTGTACTGCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAGGGGTATTCACCACGGACTTCCCCGACTAACCCTCCCTTGCAGTTTGATTATACTGCTCAAAACATAAGCACAGCCCTGTCGTCGCCGGTGAAAGACACGAGAGTGAAAGTTCTCAAATATAACACGACCGTTCAACTAATTCTTCAAGGAACAAATATCGTTGCTGGTGAAAGCCATCCTATCCATCTTCACGGCCACGAC

Fln Alignment:

AllPine_a_c89188___HPVFVPRRVDENLLYTIGLGLIXXXXXXXXXXXXXRFAASMNNISFVLPxxxxxxxxxxxxxxKGYSPRTSPTNPPLQFDYTAQNISTALSSPVKDTRVKVLKYNTTVQLILQGTNIVAGESHPIHLHGHD
Q9AUI3________________HPVFVPQSVDQNLFYTIGLGLINCPGQSCGGPNGSRFAASMNNASFVLPxxxxxxxxxxxxxxKGVFSGDFPDNPPVQFDYTAQNVSRGLWSPVKSTRVKILNYNTTVQVILQGTNIFAGESHPIHLHGYD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain