SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133642

Length: 270 nt

UniGene Fasta

>sp_v3.0_unigene133642
TGTGTAAGCTTAGCAGCGTTGGAGCAGGGCATTCAAATCCACCAACAAATAGTTAGAAGTGGTTTCCAATCTGATGTTTTTGTAGAGAGTGCCCTTGTAGACATGTATGCTAAATGTGGGAGAATAGATAAGGCACGTAATTTATTTGACAGACTGCATCAACGCAACGTTGTTTCTTGGACAACCATGATCGTAGGATATGCTATGAATGGCTTTGGCAAGGAGGCCATAAACCTATTCGAACAAATGGAAGAGTCTGGTGTAAACCCA

Ace file of the UniGene sp_v3.0_unigene133642

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8S263_ORYSJ	-	-	6.0e-22	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%

Source	Gene names
Sma3	At3g23330; At4g18750; At5g09950; F28A21.160; GSVIVT00000282001; GSVIVT00004796001; GSVIVT00006945001; GSVIVT00015057001; GSVIVT00015531001; GSVIVT00020655001; GSVIVT00021165001; GSVIVT00025485001; GSVIVT00026085001; GSVIVT00026118001; GSVIVT00029872001; G

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	lipid binding	GO:0008289	Molecular Function	-
Sma3	lipid transport	GO:0006869	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3		IPR003612	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G23330.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:8347200-8349347 FORWARD LENGTH=715	6.0e-27	51%
RefSeq	Arabidopsis thaliana	NP_188975.3	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	8.0e-27	51%
RefSeq	Populus trichocarpa	XP_002314675.1	predicted protein [Populus trichocarpa]	9.0e-26	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 90 - 232

Fln protein: CVSLAALEQGIQIHQQIVRSGFQSDVFVESALVDMYAKCGRIDKARNLFDRLHQRNVVSWTTMIVGYAMNGFGKEAINLFEQMEESGVNP

Protein Length: 91

Fln nts: TGTGTAAGCTTAGCAGCGTTGGAGCAGGGCATTCAAATCCACCAACAAATAGTTAGAAGTGGTTTCCAATCTGATGTTTTTGTAGAGAGTGCCCTTGTAGACATGTATGCTAAATGTGGGAGAATAGATAAGGCACGTAATTTATTTGACAGACTGCATCAACGCAACGTTGTTTCTTGGACAACCATGATCGTAGGATATGCTATGAATGGCTTTGGCAAGGAGGCCATAAACCTATTCGAACAAATGGAAGAGTCTGGTGTAAACCCA

Fln Alignment:

AllPine_a_rep_c89174___CVSLAALEQGIQIHQQIVRSGFQSDVFVESALVDMYAKCGRIDKARNLFDRLHQRNVVSWTTMIVGYAMNGFGKEAINLFEQMEESGVNP
D5AB53________________CANLAALEPGKVLHLYIIKSGFESDVFVGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain