SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133626

Length: 441 nt

UniGene Fasta

>sp_v3.0_unigene133626
TTTGCAAGCCACGCAGGAGCTGAGAGAGCTTTGCAAACTTACAATGGTGCACAGATGCCCAGCACTGAACAATTTTACAGGATAAATTGGGCAACCTTTCGCATTGGAGAAAAGTGGCCTGAGATTGGACCTGATTGTCGTATCTTTGTTGTGATTGCATTTGATGTGACTGACTATTTGTTGCAAGAGACATTCCAAACTAGATATTAAACTGTAAAAGGAGTCAAGGTTGTTACTGATAGGGTTACAGGCCTTTCAAAAGGATATGGGTTTGTAAGGTTTGGGGATGAGAATGAGCAAGTGCGGGCTATGACAGAGCTGAATGGGGTGTTTTGTTCCTCAAGACCTATTGGAATAGGTCCTGCCACAACAAAGAAGATCACAGTTTTTCAGCAACCATATCCTAAACATAAGTTGTGCAAATGTACATAAATGTATTGA

Ace file of the UniGene sp_v3.0_unigene133626

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative RNA Binding Protein 45 [Oryza sativa Japonica Group] dbj\|BAD05783.1\| putative RNA Binding Protein 45 [Oryza sativa Japonica Group]	-	-	2.0e-39	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Nuclear acid binding protein, putative	-	-	6.794e-23	-

Source	Gene names
Sma3	AT1G11650; AT4G27000; AT4g27000; AT5g54900/MBG8_17; At1g11650; At1g47490; At1g47500; At3g19130; At4g27000; At4g27000/F10M23.340; At5g19350; At5g54900; B1099H05.42; F10M23.340; F14J22.16; F16N3.23; F16N3.24; F25C20.21; GSVIVT00011496001; GSVIVT00014763001;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G54900.1	ATRBP45A, RBP45A RNA-binding protein 45A chr5:22295412-22298126 FORWARD LENGTH=387	61%
RefSeq	Arabidopsis thaliana	NP_568815.1	RNA-binding protein 45A [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002313332.1	predicted protein, partial [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRZ2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 144 aas, your sequence is shorter than subject: 144 - 418

Fln protein: FASHAGAERALQTYNGAQMPSTEQFYRINWATFRIGEKWPEIGPDCRIFVVIAFDVTDYLLQETFQTRY*TVKGVKVVTDRVTGLSKGYGFVRFGDENEQVRAMTELNGVFCSSRPIGIGPATTKKITVFQQPYPKHKLCKCT*

Protein Length: 145

Fln nts: TTTGCAAGCCACGCAGGAGCTGAGAGAGCTTTGCAAACTTACAATGGTGCACAGATGCCCAGCACTGAACAATTTTACAGGATAAATTGGGCAACCTTTCGCATTGGAGAAAAGTGGCCTGAGATTGGACCTGATTGTCGTATCTTTGTTGTGATTGCATTTGATGTGACTGACTATTTGTTGCAAGAGACATTCCAAACTAGATATTAAACTGTAAAAGGAGTCAAGGTTGTTACTGATAGGGTTACAGGCCTTTCAAAAGGATATGGGTTTGTAAGGTTTGGGGATGAGAATGAGCAAGTGCGGGCTATGACAGAGCTGAATGGGGTGTTTTGTTCCTCAAGACCTATTGGAATAGGTCCTGCCACAACAAAGAAGATCACAGTTTTTCAGCAACCATATCCTAAACATAAGTTGTGCAAATGTACATAAATGTATTGA

Fln Alignment:

AllPine_a_rep_c89141___FASHAGAERALQTYNGAQMPSTEQFYRINWATFRIGEKWPEIGPDCRIFVV-IAFDVTDYLLQETFQTRY*TVKGVKVVTDRVTGLSKGYGFVRFGDENEQVRAMTELNGVFCSSRPIGIGPATTKKITVFQQPYPK
B8LRZ2________________FASHAGAERFLQNHNGAQMPNTEQFYRLNWATFGIGEKRPEMGPDYPIFVGDLASDVTDYLLQETFRSRYQTVKGAKVVSDRVTGRSKGYGFVRFGDENEQVRAMTEMNGMFCSSRPMRTGPATTKKTTGFQQPYPK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain