SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133537

Length: 249 nt

UniGene Fasta

>sp_v3.0_unigene133537
CAATCTATCTGGGCTATTCAGGGACGAGGCCGTGAAGGAGGAGTCGCGGTTCACCTCGAATCAGCCGGCGTCGAGCATAGTGTCTAGACTGGAGGAGATTGCCAGGCATTTGCGGTTTAGCTTTAGGAAGTCAAAGGACTGTAAAGTGAAGTTGCGCCGGCGGTCGGAGCAGGGCCGGAAGGGGCATTTGTGTATTGATGTTGAGATTTTCGAAGTCACTCCCTCGCTTTTCGTGGTGGAGCTTAGGTA

Ace file of the UniGene sp_v3.0_unigene133537

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CBL-interacting protein kinase 22 [Populus trichocarpa] gb\|ABK95707.1\| unknown [Populus trichocarpa]	-	-	4.0e-14	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	CBL-interacting serine/threonine-protein kinase, putative	-	-	3.251e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	2.736e-07	-

Source	Gene names
Sma3	At4g18700; At5g45810; At5g45820; At5g58380; CIPK10; CIPK12; CIPK19; CIPK20; CIPK5; F28A21.110; GSVIVT00035858001; GSVIVT00037468001; K15I22.1; K15I22.2; MCK7.25; OsI_00833; PKS18; PKS2; PKS21; PKS8; RCOM_1134590; RCOM_1249840; SIP1; SnRK3.5; SnRK3.6; SnRK

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	NAF domain	IPR004041	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	NAF/FISL domain	IPR018451	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G58380.1	CIPK10, PKS2, SIP1, SNRK3.8 SOS3-interacting protein 1 chr5:23597092-23598531 REVERSE LENGTH=479	8.0e-18	52%
RefSeq	Arabidopsis thaliana	NP_568878.1	CBL-interacting serine/threonine-protein kinase 10 [Arabidopsis thaliana]	1.0e-17	52%
RefSeq	Populus trichocarpa	XP_002323059.1	predicted protein, partial [Populus trichocarpa]	1.0e-18	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWA3

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 82 - 426

Fln protein: NLSGLFRDEAVKEESRFTSNQPASSIVSRLEEIARHLRFSFRKSKDCKVKLRRRSEQGRKGHLCIDVEIFEVTPSLFVVELR

Protein Length: 83

Fln nts: CAATCTATCTGGGCTATTCAGGGACGAGGCCGTGAAGGAGGAGTCGCGGTTCACCTCGAATCAGCCGGCGTCGAGCATAGTGTCTAGACTGGAGGAGATTGCCAGGCATTTGCGGTTTAGCTTTAGGAAGTCAAAGGACTGTAAAGTGAAGTTGCGCCGGCGGTCGGAGCAGGGCCGGAAGGGGCATTTGTGTATTGATGTTGAGATTTTCGAAGTCACTCCCTCGCTTTTCGTGGTGGAGCTTAGGTA

Fln Alignment:

AllPine_a_rep_c88949___NLSGLFRDEAVK-EESRFTSNQPASSIVSRLEEIARHLRFSFRKSKDCKVKLRRRSEQGRKGHLCIDVEIFEVTPSLFVVELR
A9NWA3________________NLSGLFKDDVVKQEESRFTSTQPASSIMSKLEEIASLFRFSFKKSKDCKVKL-QGSEQGRKGQLSIDAEIFEVTPSLFVVELR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain