SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133388

Length: 392 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene133388
CTGCCTTGCTCACTGCAGCGCCAAGAATTTTATGGCGTTTAACTTGGGCTCATCACCAGCCGTGATTACATCACATCCTGAGCTGGCCAGAGCCTTGTTCGGCTCCCCTCACTTTGCAGACCGATCCCCCAAACAATCCACGCAGCAGTTGATGTTTGGCAGGGCGATGGCATTTGCGCCCAATGGTGATTATTGGGGACTCTAAGGTATTATAACTAAACTAAACACTTTACTATTCTTTAGATAAATTACAGTCTTAGTCTTATAAATTTATTTTAGAAATGGATGCAATCAATGATACAGTAGCACATACAGAAGCGCTTTGTTTACATAATTGACAATGGGAGAGTTTTGTCGCACGGTGCACCTTACCACCATTTTGCGATTTAGGT

Ace file of the UniGene sp_v3.0_unigene133388 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 78A4 n=1 Tax=Pinus radiata RepID=C78A4_PINRA	-	-	6.0e-16	67%
FL-Next	sp=Cytochrome P450 78A4; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	67%

Source	ECs	Term	Type	e value	Identity
Sma3	Flavonoid 3',5'-hydroxylase.	EC:1.14.13.88	-	2.762e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	2.762e-06	%
Sma3	Flavone and flavonol biosynthesis	00944	2.762e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	2.762e-06	%

Source	Gene names
Sma3	At1g74110; At5g09970; CYP78A20; CYP78A4; F2P9.2; F9E11.5; GSVIVT00019397001; POPTRDRAFT_347060; PRE74; RCOM_0209990; RCOM_0297800;

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G09970.1	CYP78A7 cytochrome P450, family 78, subfamily A, polypeptide 7 chr5:3112241-3113987 FORWARD LENGTH=536	8.0e-17	60%
RefSeq	Arabidopsis thaliana	NP_196559.1	cytochrome P450, family 78, subfamily A, polypeptide 7 [Arabidopsis thaliana]	1.0e-16	60%
RefSeq	Populus trichocarpa	XP_002300886.1	cytochrome P450 [Populus trichocarpa]	6.0e-18	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: O65012

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 318 aas, your sequence is shorter than subject: 68 - 553

Fln protein: CLAHCSAKNFMAFNLGSSPAVITSHPELARALFGSPHFADRSPKQSTQQLMFGRAMAFAPNGDYWGL*

Protein Length: 69

Fln nts: CTGCCTTGCTCACTGCAGCGCCAAGAATTTTATGGCGTTTAACTTGGGCTCATCACCAGCCGTGATTACATCACATCCTGAGCTGGCCAGAGCCTTGTTCGGCTCCCCTCACTTTGCAGACCGATCCCCCAAACAATCCACGCAGCAGTTGATGTTTGGCAGGGCGATGGCATTTGCGCCCAATGGTGATTATTGGGGACTCTAAGGTATTATAACTAAACTAAACACTTTACTATTCTTTAGATAAATTACAGTCTTAGTCTTATAAATTTATTTTAGAAATGGATGCAATCAATGATACAGTAGCACATACAGAAGCGCTTTGTTTACATAATTGACAATGGGAGAGTTTTGTCGCACGGTGCACCTTACCACCATTTTGCGATTTAGGT

Fln Alignment:

AllPine_a_rep_c88666___AKNFMAFNLGSSPAVITSHPELARALFGSPHFADRSPKQSTQQLMFGRAMAFAPNGDYWGL
O65012________________AKQLMSFSLGCTPAVITSDPEVARELLTSPHFANRPLKQSAQQLLFGRAIGFAPNGGYWRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain