SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133281

Length: 493 nt

UniGene Fasta

>sp_v3.0_unigene133281
AGGCTTCTCCCTCTCTCACTTTTCTACAATGCAAATGTGGCATTTGCACTGGCAAGTTTGAAAGGGATCAATATTCCCATGTATATAGCTTTGAAGAGGCTTACACCCCTAGCTGTTTTGATTGCAGGAATCTTCTGTGGTCGTGGTGAGCTGGCTGTTCTGGTCTCATTGTCGGTTACCTTGACAGGTGTTGGTGTGATAATTGCAGCTTTAGGAGATTTTTCATTGGACCTCCTCGGATACTCGTTGGCTCTTATTTCTGTATTTTTTCAGACAGCATACTTGGTATTGGTTGAAAGGTCAGCTGCAGAAGATGGGTTATCTTCAGTTGAGCTTATCTTGAATCCTTGACATTTTTCGTGGTTCTCATTCTTCATTAGTTATGGGTATCGTCCTCAACTTCACCATGTTTTATGTACGATTGTAAATTCCGCTTTAACTACTACAATTGTTGGAGTGCTGAAGGGAGTTGGCTCAACAACACTGGGATTTG

Ace file of the UniGene sp_v3.0_unigene133281

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9RNP8_RICCO	-	-	7.00649e-45	57%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	60%

Source	Gene names
Sma3	At4g31600; At4g31600/F28M20.210; F28M20.210; GSVIVT00000742001; OSJNBb0005A05.18; Os06g0188100; OsI_21963; OsJ_20396; P0470C02.29; POPTRDRAFT_737483; POPTRDRAFT_763644; RCOM_0919510; VITISV_041431;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	UAA transporter	IPR013657	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31600.1	UDP-N-acetylglucosamine (UAA) transporter family chr4:15315232-15316909 REVERSE LENGTH=323	58%
RefSeq	Arabidopsis thaliana	NP_567879.1	UDP-N-acetylglucosamine (UAA) transporter family protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002308729.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HBI3

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 164 - 298

Fln protein: RLLPLSLFYNANVAFALASLKGINIPMYIALKRLTPLAVLIAGIFCGRGELAVLVSLSVTLTGVGVIIAALGDFSLDLLGYSLALISVFFQTAYLVLVERSAAEDGLSSVELILNP*HFSWFSFFISYGYRPQLHHVLCTIVNSALTTTIVGVLKGVGSTTLGF

Protein Length: 165

Fln nts: AGGCTTCTCCCTCTCTCACTTTTCTACAATGCAAATGTGGCATTTGCACTGGCAAGTTTGAAAGGGATCAATATTCCCATGTATATAGCTTTGAAGAGGCTTACACCCCTAGCTGTTTTGATTGCAGGAATCTTCTGTGGTCGTGGTGAGCTGGCTGTTCTGGTCTCATTGTCGGTTACCTTGACAGGTGTTGGTGTGATAATTGCAGCTTTAGGAGATTTTTCATTGGACCTCCTCGGATACTCGTTGGCTCTTATTTCTGTATTTTTTCAGACAGCATACTTGGTATTGGTTGAAAGGTCAGCTGCAGAAGATGGGTTATCTTCAGTTGAGCTTATCTTGAATCCTTGACATTTTTCGTGGTTCTCATTCTTCATTAGTTATGGGTATCGTCCTCAACTTCACCATGTTTTATGTACGATTGTAAATTCCGCTTTAACTACTACAATTGTTGGAGTGCTGAAGGGAGTTGGCTCAACAACACTGGGATTTG

Fln Alignment:

AllPine_a_rep_c88468___RLLPLSLFYNANVAFALASLKGINIPMYIALKRLTPLAVLIAGIFCGRGELAXXXXXXXXXXXXXXIIAALGDFSLDLLGYSLALISVFFQTAYLVLVERSAAEDGLSSVELILNP*HFSW--------------------------FSFFI------SYGYRPQLHHVLCTIVNSALTTTIVGVLKGVGSTTLGF
B9HBI3________________RLLPVSLFYNANVAFALASLRGVNIPMYIAIKRLTPLAVLIAGIFSGKGKPTTQVTLSVLLIAAGVIIAALGDFSFDLWGYGMALTSVFFQTMYLVLVERSGAEDGLSSVEIMFYNSFLSLPFLIFLIIITGEFPNSLALLFAKSNSLSFLVILVISLIMGIVLNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain