SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133277

Length: 444 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene133277
TGTATCGACCTTGGCTGTCACTCATCTTTTCTGTCTGCAGAAAGCTGCATTTGGCATCTCCTCGTTCTCCTGGCACCCGTGGCATTGTTACCATGGTTATTCCCTTCCAAAGAGGATCTGCATGGGAGCAGCCGCCTCCAGATCTAGCTTCATACTTGTTTAAAAGTCGAATTGTCTATTTGGGAATGTCACTTGTTCCAGCCGTAACAGAATTAATTATGGCAGAATTACTCTATCTGCAGTATGAGGACCCTGAGAAACCAGTCTACATGTATATCAATTCGACAGGTACTACAAAGGATGGGGAGAAGCTAGGATACGAGACTGAAGCTTTTGCAGTTTATGATACAATGTATGTAAAGCCACCAATTTTTACTCTTTGTATTGGTAACGCATGGGGGGAAGCATACCTTAGCTTTTGGCGGCTGGTGCAAAAGGAAATCG

Ace file of the UniGene sp_v3.0_unigene133277 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=3 Tax=Physcomitrella patens subsp. patens RepID=A9RQL9_PHYPA	-	-	83%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Sma3	ATP-dependent Clp protease proteolytic subunit	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Endopeptidase Clp.	EC:3.4.21.92	-	2.857e-09	-

Source	Gene names
Sma3	At1g09130; At1g49970; At4g17040; CHLREDRAFT_205482; CLP; CLPP3; CLPP6; CLPR1; CLPR3; CLPR4; ClpP2; ClpP3; ClpR1; ClpR3; F2J10.14; F7G19.1; FCAALL.413; GSVIVT00001455001; GSVIVT00010014001; GSVIVT00022709001; LOC_Os03g22430; MICPUCDRAFT_49501; MICPUCDRAFT_

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast thylakoid	GO:0009534	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplastic endopeptidase Clp complex	GO:0009840	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S14, ClpP	IPR001907	-	0.0	-
Sma3	Peptidase S14, ClpP, active site	IPR018215	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17040.1	CLPR4 CLP protease R subunit 4 chr4:9586740-9589297 REVERSE LENGTH=305	84%
RefSeq	Arabidopsis thaliana	NP_567521.1	ATP-dependent Clp protease proteolytic subunit-related protein 4 [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002329556.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPS8

Fln msg: Distance to subject end: 119 aas, your sequence is shorter than subject: 147 - 327

Fln protein: YRPWLSLIFSVCRKLHLASPRSPGTRGIVTMVIPFQRGSAWEQPPPDLASYLFKSRIVYLGMSLVPAVTELIMAELLYLQYEDPEKPVYMYINSTGTTKDGEKLGYETEAFAVYDTMYVKPPIFTLCIGNAWGEAYLSFWRLVQKEI

Protein Length: 148

Fln nts: TGTATCGACCTTGGCTGTCACTCATCTTTTCTGTCTGCAGAAAGCTGCATTTGGCATCTCCTCGTTCTCCTGGCACCCGTGGCATTGTTACCATGGTTATTCCCTTCCAAAGAGGATCTGCATGGGAGCAGCCGCCTCCAGATCTAGCTTCATACTTGTTTAAAAGTCGAATTGTCTATTTGGGAATGTCACTTGTTCCAGCCGTAACAGAATTAATTATGGCAGAATTACTCTATCTGCAGTATGAGGACCCTGAGAAACCAGTCTACATGTATATCAATTCGACAGGTACTACAAAGGATGGGGAGAAGCTAGGATACGAGACTGAAGCTTTTGCAGTTTATGATACAATGTATGTAAAGCCACCAATTTTTACTCTTTGTATTGGTAACGCATGGGGGGAAGCATACCTTAGCTTTTGGCGGCTGGTGCAAAAGGAAATCG

Fln Alignment:

AllPine_a_rep_c88460___QPPPDLASYLFKSRIVYLGMSLVPAVTELIMAELLYLQYEDPEKPVYMYINSTGTTK-DGEKLGYETEAFAVYDT-MYVKPPIFTLCIGNAWGEAYL
C0PPS8________________RPPPDLPSLLLNSRIIFIGMPLVPAVTELVIAEFLYLQWLDPRQPTYVYINSTGTSREDGETVALETEGFAIYDTMMQMKNEIHTVAFGAAVGQACL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain