SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133253

Length: 377 nt

UniGene Fasta

>sp_v3.0_unigene133253
ATGGGTCCTGCCGATGTTATCAGTGATCAAAGGGTTAAGACTGTCATTCCGAAAGAAAATCAGTTGCGGTAGTCAGGGGATCCCCGGTCATGGCCACGGGACAGACAAGATAGATTTATAAAACGCTTCGCCGATGCGCTCTCTGATCCTAAAGTAACCCCTGAGGTCAGGAGCGTGTGGCTATCGTACTGGGCTCAGTGTGACAGGAGCCTTGGCCAGAGGTTGGCTTCTCGTATGGGGATGAAAGCTTCGTTGTAAGAAGATCATCCAGACGCTTTACATTGGCTGTTACGGCGTTTCGTTGTACAGTCTTCTAGTGTATTACAATAATTATTGCTCTGGGTGTGCCAGGGTCAATAATAATACTCGTTAAATAT

Ace file of the UniGene sp_v3.0_unigene133253

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Catalase n=3 Tax=Picea sitchensis RepID=A9NUY8_PICSI	-	-	6.0e-31	78%
FL-Next	sp=Catalase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Catalase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Catalase.	EC:1.11.1.6	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Tryptophan metabolism	00380	%
Sma3	Methane metabolism	00680	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	At1g20630; CAT; CAT1; CAT2; CAT3; CAT4; CATA2; Cat3; CatC; F2D10.11; F5M15.31; GCat; GSVIVT00002880001; GSVIVT00004080001; GSVIVT00004081001; LOC_Os03g03910; LSC650; Os03g0131200; OsI_09857; OsJ_09293; PHYPADRAFT_223469; PHYPADRAFT_227480; PHYPADRAFT_6472

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	glyoxysome	GO:0009514	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	catalase activity	GO:0004096	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	cellular response to nitrogen starvation	GO:0006995	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	cellular response to sulfate starvation	GO:0009970	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Catalase haem-binding site	IPR002226	-	-
Sma3	Catalase immune-responsive domain	IPR010582	-	-
Sma3	Catalase core domain	IPR011614	-	-
Sma3	Catalase, mono-functional, haem-containing	IPR018028	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20620.1	CAT3, SEN2, ATCAT3 catalase 3 chr1:7143142-7146193 FORWARD LENGTH=492	2.0e-23	51%
RefSeq	Arabidopsis thaliana	NP_001031072.3	catalase 3 [Arabidopsis thaliana]	7.0e-24	51%
RefSeq	Populus trichocarpa	XP_002301920.1	catalase [Populus trichocarpa]	3.0e-24	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKX4

Fln msg: your sequence is shorter than subject: 86 - 471

Fln protein: MGPADVISDQRVKTVIPKENQLR*SGDPRSWPRDRQDRFIKRFADALSDPKVTPEVRSVWLSYWAQCDRSLGQRLASRMGMKASL*

Protein Length: 87

Fln nts: ATGGGTCCTGCCGATGTTATCAGTGATCAAAGGGTTAAGACTGTCATTCCGAAAGAAAATCAGTTGCGGTAGTCAGGGGATCCCCGGTCATGGCCACGGGACAGACAAGATAGATTTATAAAACGCTTCGCCGATGCGCTCTCTGATCCTAAAGTAACCCCTGAGGTCAGGAGCGTGTGGCTATCGTACTGGGCTCAGTGTGACAGGAGCCTTGGCCAGAGGTTGGCTTCTCGTATGGGGATGAAAGCTTCGTTGTAA___GAAGATCATCCAGACGCTTTACATTGGCTGTTACGGCGTTTCGTTGTACAGTCTTCTAGTGTATTACAATAATTATTGCTCTGGGTGTGCCAGGGTCAATAATAATACTCGTTAAATAT

Fln Alignment:

AllPine_a_rep_c88420___PADVISDQRVKTVIPKENQLR*SGDP-RSWPRDRQDRFIKRFADALSDPKVTPEVRSVWLSYWAQCDRSLGQRLASRMGMKASL
B8LKX4________________PTDVISDRRVKTVIPKENNFKQSGELFRSWPRDRQERFIKRFADVASDPKVTPEIRSVWLSFWAQCDRGLGQRLASRLGMKALL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain