SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133138

Length: 193 nt

UniGene Fasta

>sp_v3.0_unigene133138
ATGGGGAAGTTGCCATCAAGAAGATGAAAGCAACTAAAACAAAAGAATTTCAGGTGGAAATGAAAGTTCTTTGTAAGGTTCATCACATCAACTTGAGCTGATTGGCTATGCAGCAAGTGAAGATGAACTTTTCCTTGTCTATGAATATGCACATAACAGCTCAGTCAGTAGTCACCTTCACGATCCTTCAAGC

Ace file of the UniGene sp_v3.0_unigene133138

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein [Musa balbisiana]	-	-	9.0e-11	73%
FL-Next	tr=Putative uncharacterized protein Sb03g034160; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	83%

Source	Gene names
Sma3	POPTRDRAFT_1067650; T14L22.13;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G51940.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein chr1:19296092-19298941 REVERSE LENGTH=651	9.0e-13	80%
RefSeq	Arabidopsis thaliana	NP_175606.2	LysM type receptor kinase-like protein [Arabidopsis thaliana]	1.0e-12	80%
RefSeq	Populus trichocarpa	XP_002299738.1	predicted protein [Populus trichocarpa]	4.0e-13	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5XJ82

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 95 and 92, Distance to subject end: 214 aas, your sequence is shorter than subject: 64 - 664

Fln protein: GEVAIKKMKATKTKEFQVEMKVLCKVHHIxxxLIGYAASEDELFLVYEYAHNSSVSSHLHDPSS

Protein Length: 65

Fln nts: ATGGGGAAGTTGCCATCAAGAAGATGAAAGCAACTAAAACAAAAGAATTTCAGGTGGAAATGAAAGTTCTTTGTAAGGTTCATCACATCxxxxxxxxxCTGATTGGCTATGCAGCAAGTGAAGATGAACTTTTCCTTGTCTATGAATATGCACATAACAGCTCAGTCAGTAGTCACCTTCACGATCCTTCAAGC

Fln Alignment:

AllPine_a_c88205___EVAIKKMKATKTKEFQVEMKVLCKVHHINLLELIGYAASEDELFLVYEYAHN
C5XJ82________________EVAIKRMMATKTKEFIVEMKVLCKVHHASLVELIGYAASKDELFLVYEYSQN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain