SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133126

Length: 218 nt

UniGene Fasta

>sp_v3.0_unigene133126
AATGTGCTTTCACTAAATACGCCAAGAAGTATGTATTCCGAGGATGGTAAGAAGGAGATCCAGGCGGAGCTCGAGAAAATGAAGAAGTATGCAACCGTCATTAGGGTTCTTGCTCACACCCAGATTAAGAAGATGAAAGGATTGAAACAGAAGGTCTACAGGATTGGGAAGTCCGATCAGGAATCCCAGAAGGCAATGACTGAATTCGATAGGACTGA

Ace file of the UniGene sp_v3.0_unigene133126

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L3-1 n=7 Tax=Brassicaceae RepID=RL31_ARATH	-	-	8.0e-12	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Ribosomal protein L3	-	-	3.449e-14	-

Source	Gene names
Sma3	ARP1; ARP2; AT1G61580; At1g43170; At1g61580; EMB2207; GSVIVT00010223001; GSVIVT00031743001; Os12g0167900; OsI_35258; OsI_37606; OsJ_35352; PHYPADRAFT_190959; PHYPADRAFT_225706; PHYPADRAFT_63080; POPTRDRAFT_583524; POPTRDRAFT_830146; POPTRDRAFT_831551; RCO

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L3	IPR000597	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G43170.1	ARP1, emb2207, RPL3A, RP1 ribosomal protein 1 chr1:16266992-16268631 FORWARD LENGTH=389	1.0e-16	92%
RefSeq	Arabidopsis thaliana	NP_001077671.1	60S ribosomal protein L3-1 [Arabidopsis thaliana]	7.0e-17	92%
RefSeq	Populus trichocarpa	XP_002331138.1	predicted protein [Populus trichocarpa]	1.0e-15	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZI7

Fln msg: Distance to subject end: 190 aas, your sequence is shorter than subject: 72 - 389

Fln protein: NVLSLNTPRSMYSEDGKKEIQAELEKMKKYATVIRVLAHTQIKKMKGLKQKVYRIGKSDQESQKAMTEFDRT

Protein Length: 73

Fln nts: AATGTGCTTTCACTAAATACGCCAAGAAGTATGTATTCCGAGGATGGTAAGAAGGAGATCCAGGCGGAGCTCGAGAAAATGAAGAAGTATGCAACCGTCATTAGGGTTCTTGCTCACACCCAGATTAAGAAGATGAAAGGATTGAAACAGAAGGTCTACAGGATTGGGAAGTCCGATCAGGAATCCCAGAAGGCAATGACTGAATTCGATAGGACTGA

Fln Alignment:

AllPine_a_rep_c88170___SEDGKKEIQAELEKMKKYATVIRVLAHTQIKKMKGLKQK
A9NZI7________________SEEGKKDIQTELEKMKKYATVIRVLAHTQIKKMKGLKQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain