SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133104

Length: 367 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene133104
GAGTAACAAAAACATAATTATGCTCTATAATGCATGGCTCGATAGAAAGACAAGTCATGTGAATTTCATTACTGAGGTCTGTACCTCGGGTACTCTGAGAGAGTACCGCCAGAAGCACCGTCATGTCTCCCTGAAGGCTTTGAAGAACTGGGCACTTCAGATACTGGGAGGATTGCATTATCTTCATAATCATGAGCCTTGTGTAATTCACAGAGATTTGAATTGCAGCAATATTTTGTGAATGGCAATAGTGGCGTTCTGAAGATTGGGGATCTGGGTCTTGCCACTACCCTGGTAAATGATCGTTGTGCACACACTGTCCTCGGTACTCCGGAATTCATGGCTCCAGAATTATATGAAGAGGATT

Ace file of the UniGene sp_v3.0_unigene133104 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSS7_RICCO	-	-	3.99931e-42	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	With no lysine kinase	-	-	8.06503e-41	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	5.031e-31	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	8.266e-16	-

Source	Gene names
Sma3	AT1G49160; At1g49160; At1g64630; At3g04910; At3g18750; At3g48260; At3g51630; At5g28080; At5g41990; At5g55560; At5g58350; CHLREDRAFT_162667; FLR; GSVIVT00000541001; GSVIVT00006916001; GSVIVT00008654001; GSVIVT00015972001; GSVIVT00019984001; GSVIVT000239510

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	circadian rhythm	GO:0007623	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55560.1	Protein kinase superfamily protein chr5:22506477-22507757 REVERSE LENGTH=314	3.9937e-43	68%
RefSeq	Arabidopsis thaliana	NP_200367.2	putative serine/threonine-protein kinase WNK11 [Arabidopsis thaliana]	5.00264e-43	68%
RefSeq	Populus trichocarpa	XP_002321177.1	predicted protein [Populus trichocarpa]	2.94273e-44	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQP1

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 235 and 235, Distance to subject end: 88 aas, your sequence is shorter than subject: 122 - 290

Fln protein: SNKNIIMLYNAWLDRKTSHVNFITEVCTSGTLREYRQKHRHVSLKALKNWALQILGGLHYLHNHEPCVIHRDLNCSNxxVNGNSGVLKIGDLGLATTLVNDRCAHTVLGTPEFMAPELYEED

Protein Length: 123

Fln nts: GAGTAACAAAAACATAATTATGCTCTATAATGCATGGCTCGATAGAAAGACAAGTCATGTGAATTTCATTACTGAGGTCTGTACCTCGGGTACTCTGAGAGAGTACCGCCAGAAGCACCGTCATGTCTCCCTGAAGGCTTTGAAGAACTGGGCACTTCAGATACTGGGAGGATTGCATTATCTTCATAATCATGAGCCTTGTGTAATTCACAGAGATTTGAATTGCAGCAATxxxxxxGTGAATGGCAATAGTGGCGTTCTGAAGATTGGGGATCTGGGTCTTGCCACTACCCTGGTAAATGATCGTTGTGCACACACTGTCCTCGGTACTCCGGAATTCATGGCTCCAGAATTATATGAAGAGGATT

Fln Alignment:

AllPine_a_rep_c88124___NKNIIMLYNAWLDRKTSHVNFITEVCTSGTLREYRQKHRHVSLKALKNWALQILGGLHYLHNHEPCVIHRDLNCSNIFVNGNSGVLKIGDLGLATTLVNDRCAHTVLGTPEFMAPELYEED
A9NQP1________________NENIIMLYNAWLDKKTRHVNFITEVCTSGTLREYRQKHRHVSMKALKNWALQILGGLHYLHNHEPCIIHRDLNCSNIFVNGNSGVLKIGDLGLATTLGNDHAAHTVLGTPEFMAPELYDED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain