SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133022

Length: 378 nt

UniGene Fasta

>sp_v3.0_unigene133022
GGAACATGGCGCTGGATGCTAGGAATGGCTGGTGTACCTGCAGTCCTTCAAGTACTCATATTCACATGTTTGCCAGAATCACCCCGATGGCTAATTAGAAAGGGAAATGTTGATGACGCTATTCCTATTTTTCAAAGAATTTATCCTCCAGAGGACTTGAAGACTGAATTAGAGCAGATTATGGATGCGGCAGAGGCTGAATCTGGTCCTGATGGAATTGCAAAGGATATAAGCATTGGTGATATATTGGGTTCAAAGGAGATGAGGCTAGCACTAATAGCAGGTGTTGGAACATTTTTCAGCAGTTGGTGGGTATTAATACTGTGATGTATTACAGTCCATCTATCATGGAGCTAGCAGGATTTGCCTCTCATAGGA

Ace file of the UniGene sp_v3.0_unigene133022

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable inositol transporter 2 n=2 Tax=Arabidopsis RepID=INT2_ARATH	-	-	2.0e-28	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G30220.1	ATINT2, INT2 inositol transporter 2 chr1:10632957-10635439 REVERSE LENGTH=580	1.0e-30	47%
RefSeq	Arabidopsis thaliana	NP_174313.1	putative inositol transporter 2 [Arabidopsis thaliana]	1.0e-30	47%
RefSeq	Populus trichocarpa	XP_002327961.1	predicted protein, partial [Populus trichocarpa]	2.0e-26	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLI2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 281 aas, your sequence is shorter than subject: 109 - 589

Fln protein: GTWRWMLGMAGVPAVLQVLIFTCLPESPRWLIRKGNVDDAIPIFQRIYPPEDLKTELEQIMDAAEAESGPDGIAKDISIGDILGSKEMRLALIAGVGTFFSSWWVLIL*

Protein Length: 110

Fln nts: GGAACATGGCGCTGGATGCTAGGAATGGCTGGTGTACCTGCAGTCCTTCAAGTACTCATATTCACATGTTTGCCAGAATCACCCCGATGGCTAATTAGAAAGGGAAATGTTGATGACGCTATTCCTATTTTTCAAAGAATTTATCCTCCAGAGGACTTGAAGACTGAATTAGAGCAGATTATGGATGCGGCAGAGGCTGAATCTGGTCCTGATGGAATTGCAAAGGATATAAGCATTGGTGATATATTGGGTTCAAAGGAGATGAGGCTAGCACTAATAGCAGGTGTTGGAACATTTTTCAGCAGTTGGTGGGTATTAATACTGTGATGTATTACAGTCCATCTATCATGGAGCTAGCAGGATTTGCCTCTCATAGGA

Fln Alignment:

AllPine_a_rep_c87963___GTWRWMLGMAGVPAVLQVLIFTCLPESPRWLIRKGNVDDAIPIFQRIYPPEDLKTELEQIMDAAEAESGPDGIAKDISIGDILGSKEMRLALIAGVG
B8LLI2________________GTWRWMLGVAGMPALLQFILMLTLPESPRWLYRKKGEAEAVAVLKRIYSPDEVEEEIQSLKESVETEVQELGTTDKVRYWQLWTTKEIRYALFVGVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain