SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132973

Length: 409 nt

UniGene Fasta

>sp_v3.0_unigene132973
GTTCTGGGAGCTAGTTCCGGATGTTTGCAGTATCGGAGAGAGAGAGAAGACGAGCGGCTGTCTTCAACCAAGCGACTTGCAGTTTTCACAGGACAACCGTAGCCATGTCTGGGAGAAAGAAGGTTAGAGAGCCCAAAGAGGAGACTGTTACCCTAGGTCCTAGTGTTCGAGAAGGTGAGCAAGTGTTTGGAGTGGCGCACATATTCGCATCCTTCAATGACACCTTTGTGCATGTGACTGATCTCTCTGGAAAGGAAACACTTGCATATTAAGCTTCGTGCAACAGGAGGGAATAAAACAAAGACACCTGGTCCTGGAGCACAGTCTGCCCTTCGTGCTCTTGCACGTTCTGGCATGAAGATTGGTCGTATAGAGGATGTGACTCCAATCCCTACTGACAGCACTAGGA

Ace file of the UniGene sp_v3.0_unigene132973

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytoplasmic ribosomal protein S14 [Brassica napus]	-	-	2.0e-32	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	40S ribosomal protein S14	-	-	1.524e-24	-

Source	Gene names
Sma3	At2g36160; At3g11510; At3g52580; B1136H02.20; CHLREDRAFT_24344; F22O6_40; F24K9.19; F3C22.6; F9C22.9; GSVIVT00003445001; GSVIVT00021579001; GSVIVT00037325001; MICPUCDRAFT_70746; MICPUN_113929; OJ000126_13.9; OJ1112_G07.7; OJ9003_G05.34; OSIGBa0134P10.10;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S11	IPR001971	-	0.0	-
Sma3	Ribosomal S11, conserved site	IPR018102	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G11510.1	Ribosomal protein S11 family protein chr3:3623757-3624866 REVERSE LENGTH=150	8.0e-34	84%
RefSeq	Arabidopsis thaliana	NP_187758.1	40S ribosomal protein S14-2 [Arabidopsis thaliana]	1.0e-33	84%
RefSeq	Populus trichocarpa	XP_002314245.1	predicted protein [Populus trichocarpa]	1.0e-34	86%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKR8

Fln msg: Warning!, your query overlaps and the subject is separated, STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 130 - 151

Fln protein: MFAVSERERRRAAVFNQATCSFHRTTVAMSGRKKVREPKEETVTLGPSVREGEQVFGVAHIFASFNDTFVHVTDLSGKETxxxIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTR

Protein Length: 131

Fln nts: GTTCTGGGAGCTAGTTCCGG_-_ATGTTTGCAGTATCGGAGAGAGAGAGAAGACGAGCGGCTGTCTTCAACCAAGCGACTTGCAGTTTTCACAGGACAACCGTAGCCATGTCTGGGAGAAAGAAGGTTAGAGAGCCCAAAGAGGAGACTGTTACCCTAGGTCCTAGTGTTCGAGAAGGTGAGCAAGTGTTTGGAGTGGCGCACATATTCGCATCCTTCAATGACACCTTTGTGCATGTGACTGATCTCTCTGGAAAGGAAACAxxxxxxxxxATTAAGCTTCGTGCAACAGGAGGGAATAAAACAAAGACACCTGGTCCTGGAGCACAGTCTGCCCTTCGTGCTCTTGCACGTTCTGGCATGAAGATTGGTCGTATAGAGGATGTGACTCCAATCCCTACTGACAGCACTAGGA

Fln Alignment:

AllPine_a_rep_c87851___MSGRKKVREPKEETVTLGPSVREGEQVFGVAHIFASFNDTFVHVTDLSGKETLAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR
B8LKR8________________MSGRKKVREPKEETVTLGPTVRENEQVFGVAHIFASFNDTFVHVTDLSGKETMAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLHIKLRATGGNKTKTPGPGAQSALRALARSGLKIGRIEDVTPIPTDSTR

SSRs (tot: 1)

Start position	End position	Sequence	Length
36	47	GA GA GA GA GA GA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain