SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132967

Length: 421 nt

UniGene Fasta

>sp_v3.0_unigene132967
ATGGGGATCCACTGCATTGCATTCCTTTTGATATCTCTGCCGATTATCGTTTCATATAATCTGGATCTACTTTGCTGAATTTAATATCTTTAGCATTTTCAAGTTCGAATCAGTATGGCCGAGCAAGCGCCGGAGCACCAGGATCGCGGCCTGTTCGGGTTTTTTGGCAAGAAGGAAGAGGACGGAAAGCATGAAGAGCAGATCACGCAGCCCTCTGCCACAAACGATGAGGCTCAGATTGAGGCTGCATCTTATTATCCAGCTGCTCCTCCGCATGGAGCCGAACACGGCCATGGTCACGAGGGGCAACTTACCCCTGAGGAAGCTGAGCAACAGAAACACACGGGTTTGATGGGAAAGCTTCATCGCACCCACAGTTCCAGCTCCATCTCTTCTAGTGATGAAAGAGGAAGAAGGCGAG

Ace file of the UniGene sp_v3.0_unigene132967

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dehydrin-like protein n=4 Tax=Picea RepID=A9XLM9_PICAB	-	-	1.0e-22	55%
FL-Next	tr=Dehydrin 4; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	74%
Sma3	Dehydrin-like protein	-	-	2.182e-25	-

Source	Gene names
Sma3	Dhn; Dhn1; Dhn3; Dhn4; Dhn5; dhn-1; dhn-2; dhn1; dhn2; dhn9;

Source	GOs	Term	Type	e value	Identity
Sma3	response to stress	GO:0006950	Biological Process	0.0	-
Sma3	response to water	GO:0009415	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Dehydrin	IPR000167	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9XKM9

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 102 - 169

Fln protein: MAEQAPEHQDRGLFGFFGKKEEDGKHEEQITQPSATNDEAQIEAASYYPAAPPHGAEHGHGHEGQLTPEEAEQQKHTGLMGKLHRTHSSSSISSSDERGRRR

Protein Length: 103

Fln nts: ATGGGGATCCACTGCATTGCATTCCTTTTGATATCTCTGCCGATTATCGTTTCATATAATCTGGATCTACTTTGCTGAATTTAATATCTTTAGCATTTTCAAGTTCGAATCAGT_-_ATGGCCGAGCAAGCGCCGGAGCACCAGGATCGCGGCCTGTTCGGGTTTTTTGGCAAGAAGGAAGAGGACGGAAAGCATGAAGAGCAGATCACGCAGCCCTCTGCCACAAACGATGAGGCTCAGATTGAGGCTGCATCTTATTATCCAGCTGCTCCTCCGCATGGAGCCGAACACGGCCATGGTCACGAGGGGCAACTTACCCCTGAGGAAGCTGAGCAACAGAAACACACGGGTTTGATGGGAAAGCTTCATCGCACCCACAGTTCCAGCTCCATCTCTTCTAGTGATGAAAGAGGAAGAAGGCGAG

Fln Alignment:

AllPine_a_rep_c87839___MAEQAPEHQDRGLFGFFGKKEEDGKH-EEQITQPSATNDEAQIEAASYYXXXXXXXXXXXXXXXXQLTPEEAEQQKHTGLMGKLHRTHXXXXXXXXD--ERGRRR
A9XKM9________________MAEQAPEHQDRGLFGLFGKKKEEGKHDDDQILHPPDTHTHTQNEAASYYPTPPQHGVEHGHGHEGQLTPEEAEKQKHTGLLGKLHRTHSSSSSSSSDEEEEGRKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain