SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132926

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene132926
TTTCATCCGGGGATGTTCCTTTAACTGCTGTTCAGCTTCTCTGGGTCCAACCTTATCATGGATACTCTTGGAGCTCTTGCTTTGGCAACTGAATCCCCAACTGATCGTCTGATGCGGCAGCCTCCTGTAGGGCGCAGGGAACCCCTCATCACAAAGAATTGTGGAGAAATGTTATAGCACAAGCTTTGTTCCAAGTTACAGTCCTCCTTATATTTACATTTAA

Ace file of the UniGene sp_v3.0_unigene132926

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OSJNBa0035M09.2 protein n=2 Tax=Oryza sativa RepID=Q7X8B5_ORYSJ	-	-	2.0e-09	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Autoinhibited calcium ATPase	-	-	1.31e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Calcium-transporting ATPase.	EC:3.6.3.8	-	4.995e-36	-

Source	Gene names
Sma3	ACA10; ACA12; ACA13; ACA8; ACA9; AT5G57110; At3g21180; At3g22910; At3g63380; At3g63380/MAA21_10; At4g29900; At5g57110; B1150F11.11; CA8; CA9; F27B13.140; F5N5.8; GSVIVT00020071001; GSVIVT00020073001; GSVIVT00020075001; GSVIVT00020078001; GSVIVT00020080001

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	calcium-transporting ATPase activity	GO:0005388	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	protein self-association	GO:0043621	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-
Sma3	single fertilization	GO:0007338	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	inflorescence morphogenesis	GO:0048281	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, calcium-transporting, PMCA-type	IPR006408	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G57110.1	ACA8, AT-ACA8 autoinhibited Ca2+ -ATPase, isoform 8 chr5:23109729-23116857 REVERSE LENGTH=1074	1.0e-12	85%
RefSeq	Arabidopsis thaliana	NP_851200.1	calcium-transporting ATPase 8 [Arabidopsis thaliana]	2.0e-12	85%
RefSeq	Populus trichocarpa	XP_002309001.1	autoinhibited calcium ATPase [Populus trichocarpa]	3.0e-13	88%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A955

Fln msg: Separated hits, possible frame ERROR between 153 and 159, Distance to subject end: 141 aas, your sequence is shorter than subject: 55 - 197

Fln protein: MDTLGALALATESPTDRLMRQPPVGRREPLIxxxLWRNVIAQALFQVTVLLIFTF

Protein Length: 56

Fln nts: TTTCATCCGGGGATGTTCCTTTAACTGCTGTTCAGCTTCTCTGGGTCCAACCTTATC_-_ATGGATACTCTTGGAGCTCTTGCTTTGGCAACTGAATCCCCAACTGATCGTCTGATGCGGCAGCCTCCTGTAGGGCGCAGGGAACCCCTCATCACxxxxxxATTGTGGAGAAATGTTATAGCACAAGCTTTGTTCCAAGTTACAGTCCTCCTTATATTTACATTTAA

Fln Alignment:

AllPine_a_rep_c87761___MDTLGALALATESPTDRLMRQPPVGRREPLITxxLWRNVIAQALFQVTVLLIFTF
D5A955________________MDTLGALALATGPPTDQLMRKHPVGRREPLITxxMWRNVIAQALFQVIVLLTLTF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain