SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132887

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene132887
TAAAAGAGTATATTTCATTTCTTGATGGACCTGGTTGGAAGTGAGTCTGATTTTGCTGTATATGTTATTGTCGTGACCTTGCTGTCCCTGGTCTTAGAGAAAGTGAAGCACAGCAATGCCTTGCTGCTGTTGCAGCCTGCTCACGAGTTCGATTTGTGGCTTCTGTTGATCATGTGAATGCACCACTCTTATGGGATAAGCAAATGGCCAGAGCACAATTCAAACTGGTGGTGGTATCA

Ace file of the UniGene sp_v3.0_unigene132887

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	origin recognition complex subunit 2 [Zea mays] gb\|AAL10453.1\|AF417482_1 origin recognition complex subunit 2 [Zea mays] gb\|ACG42340.1\| origin recognition complex subunit 2 [Zea mays]	-	-	2.0e-11	63%
FL-Next	sp=Origin recognition complex subunit 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Sma3	Os03g0184700 protein	-	-	8.285e-06	-

Source	Gene names
Sma3	GSVIVT00014796001; LOC_Os03g08640; Os03g0184700; OsI_10291; OsJ_09689;

Source	GOs	Term	Type	Identity
Sma3	origin recognition complex	GO:0000808	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA replication	GO:0006260	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	0.0	-
Sma3	Origin recognition complex, subunit 2	IPR007220	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G37560.1	ORC2, ATORC2 origin recognition complex second largest subunit 2 chr2:15759568-15761116 FORWARD LENGTH=363	2.0e-15	48%
RefSeq	Arabidopsis thaliana	NP_973624.1	origin recognition complex subunit 2 [Arabidopsis thaliana]	2.0e-15	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38899

Fln msg: Distance to subject end: 125 aas, your sequence is shorter than subject: 79 - 363

Fln protein: KEYISFLDGPGWK*V*FCCICYCRDLAVPGLRESEAQQCLAAVAACSRVRFVASVDHVNAPLLWDKQMARAQFKLVVVS

Protein Length: 80

Fln nts: TAAAAGAGTATATTTCATTTCTTGATGGACCTGGTTGGAAGTGAGTCTGATTTTGCTGTATATGTTATTGTCGTGACCTTGCTGTCCCTGGTCTTAGAGAAAGTGAAGCACAGCAATGCCTTGCTGCTGTTGCAGCCTGCTCACGAGTTCGATTTGTGGCTTCTGTTGATCATGTGAATGCACCACTCTTATGGGATAAGCAAATGGCCAGAGCACAATTCAAACTGGTGGTGGTATCA

Fln Alignment:

AllPine_a_c87678___EYISFLDGP--GWK*V*FCCICYCRDLAVPGLRESEAQQCLAAVAACSRVRFVASVDHVNAPLLWDKQMARAQF
Q38899________________DILSFLHGPQSGDKDCFICVVVH--NIDGPALRDPESQQTLARLSSCSHIRLVASIDHVNAPLLWDKKMVHKQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain