SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132849

Length: 499 nt

UniGene Fasta

>sp_v3.0_unigene132849
CGAAGCATTTTGGAAGACAGGGCTATGGAGGCGCGCACGGTGTTCAGCACGGTGTTTGCTCCCACAACCTCCAAGACAGCATCCCCAGACGTTATAGTGGCAGCCTCCAGCGATGGAAGCATTGCACCCTATTCTATTCCTGCGTGCATTTCTGCTACTTCTTCGTCTTCTTATCCTGCTATCCATTGGGCCCCTCCGAGAGCAAATGGCACCATCATTTGATGTGTGTTTGGGGAAGGTCTGTGCTTGACTGCCCAGTGGCAGAACCCCTTTGTTCTCTTTCAGGACACAATGGTCCTGCGTATGACCTAAAATTCTATGGCGAAGGCGAGGATTCATTGTTATTGAGTTGCGGGGATGATGGTCGTATTCAAGGTTGGCGGTGGCAAGAAATTTCAAATGCCTTTGCAAGTGCAATTCAAAGTAGTACAAGTACTCTGCAACCCTTGCTTGAATTTAAGAATCCTCAACAAAAAGGGCCATGGGGTGCACTTTCTCC

Ace file of the UniGene sp_v3.0_unigene132849

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	THO complex subunit 6 [Arabidopsis thaliana] sp\|Q8L4M1.1\|DWA1_ARATH RecName: Full=WD repeat-containing protein DWA1; AltName: Full=Protein DWD HYPERSENSITIVE TO ABA 1 gb\|AAM20569.1\| putative WD-40 repeat protein [Arabidopsis thaliana] gb\|AAM91279.1\| putat	-	-	8.0e-31	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Putative WD-40 repeat protein	-	-	8.405e-08	-

Source	Gene names
Sma3	At2g19430; GSVIVT00016529001; RCOM_1047550;

Source	GOs	Term	Type	e value	Identity
Sma3	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	0.0	-
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G19430.1	DWA1, THO6, AtTHO6 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 chr2:8415217-8417740 FORWARD LENGTH=367	1.0e-32	59%
RefSeq	Arabidopsis thaliana	NP_849989.1	THO complex subunit 6 [Arabidopsis thaliana]	1.0e-32	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAS1

Fln msg: Overlapping hits, possible frame ERROR between 270 and 174, Distance to subject end: 218 aas, your sequence is shorter than subject: 166 - 397

Fln protein: RSILEDRAMEARTVFSTVFAPTTSKTASPDVIVAASSDGSIAPYSIPACISATSSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCSLSGHNGPAYDLKFYGEGEDSLLLSCGDDGRIQGWRWQEISNAFASAIQSSTSTLQPLLEFKNPQQKGPWGALS

Protein Length: 167

Fln nts: CGAAGCATTTTGGAAGACAGGGCTATGGAGGCGCGCACGGTGTTCAGCACGGTGTTTGCTCCCACAACCTCCAAGACAGCATCCCCAGACGTTATAGTGGCAGCCTCCAGCGATGGAAGCATTGCACCCTATTCTATTCCTGCGTGCATTTCTGCTACTTCTTCGTCTTCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGTTCTCTTTCAGGACACAATGGTCCTGCGTATGACCTAAAATTCTATGGCGAAGGCGAGGATTCATTGTTATTGAGTTGCGGGGATGATGGTCGTATTCAAGGTTGGCGGTGGCAAGAAATTTCAAATGCCTTTGCAAGTGCAATTCAAAGTAGTACAAGTACTCTGCAACCCTTGCTTGAATTTAAGAATCCTCAACAAAAAGGGCCATGGGGTGCACTTTCTCC

Fln Alignment:

AllPine_a_c87595___SILEDRAMEARTVFSTVFAPTTSKTASPDVIVAASSDGSIAPYSIPACISAT-SSSSYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSGHNGPAYDLKFYGEGEDSLLLSCGDDGRIQGWRWQEISNAFASAIQSSTSTLQPLLEFKNPQQKGPWGALS
D5AAS1________________SILEDRALEARTVFSTVFAPTTSKTTSPDVIVAASSDGSIAPYSIAACISATSSSSSYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSGHSGPAYDLKFYGEGEDSLLLSCGDDGRIQGWRWQDISNAFASAVQHGTSTLQPLLEFKNPQQKGPWGALS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain