SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132745

Length: 400 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene132745
GTAACAGATGCAAAGGATAGGTGTGAGCCCAGACCATATCACCTTCATTGGTATTCTCTCTGCCTGCAGCCATACTGGTTTACTGGAAGAAGGTTGGCATTACTTCAACTCAATGAGTGAAGTTCATGGCATTAGAGCAGAAGCAGACCACTATGCTTGCATGGTTGACCTTCTTGGCCGTGCTGGGCAGCTTGACGAGGCAGAAAGATTTATCTCCAACATGCCATTTGAACCAGATGCTAGTGTGTGGGAGGCATTGCTCCATGCTTGCAGGATTCATGGGAACATGCATCTTGGAGAGCAAGCAGCAGAGTGCCTGTTTGAGTTGGAACCACAAACTGAGGCAACTTATATCCTGATATCAAACATCTATGCTGCACATGGCAGATGGGATGATGTA

Ace file of the UniGene sp_v3.0_unigene132745 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Pentatricopeptide, putative, expressed	-	-	8.153e-08	-

Source	Gene names
Sma3	At1g06140; At1g08070; At1g18485; At1g20230; At1g74600; At2g03880; At2g13600; At2g21090; At3g23330; At3g24000; At3g49170; At4g02750; At4g13650; At4g19191; At4g33990; At5g09950; At5g39350; At5g40410; At5g48910; B1032F05.19; B1080A02.28; EMB2261; EMB2758; F1

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:1221116-1223461 REVERSE LENGTH=781	52%
RefSeq	Arabidopsis thaliana	NP_192184.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002318526.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 150 aas, your sequence is shorter than subject: 133 - 370

Fln protein: *QMQRIGVSPDHITFIGILSACSHTGLLEEGWHYFNSMSEVHGIRAEADHYACMVDLLGRAGQLDEAERFISNMPFEPDASVWEALLHACRIHGNMHLGEQAAECLFELEPQTEATYILISNIYAAHGRWDDV

Protein Length: 134

Fln nts: GTAACAGATGCAAAGGATAGGTGTGAGCCCAGACCATATCACCTTCATTGGTATTCTCTCTGCCTGCAGCCATACTGGTTTACTGGAAGAAGGTTGGCATTACTTCAACTCAATGAGTGAAGTTCATGGCATTAGAGCAGAAGCAGACCACTATGCTTGCATGGTTGACCTTCTTGGCCGTGCTGGGCAGCTTGACGAGGCAGAAAGATTTATCTCCAACATGCCATTTGAACCAGATGCTAGTGTGTGGGAGGCATTGCTCCATGCTTGCAGGATTCATGGGAACATGCATCTTGGAGAGCAAGCAGCAGAGTGCCTGTTTGAGTTGGAACCACAAACTGAGGCAACTTATATCCTGATATCAAACATCTATGCTGCACATGGCAGATGGGATGATGTA

Fln Alignment:

AllPine_a_c87420___QMQRIGVSPDHITFIGILSACSHTGLLEEGWHYFNSMSEVHGIRAEADHYACMVDLLGRAGQLDEAERFISNMPFEPDASVWEALLHACRIHGNMHLGEQAAECLFELEPQTEATYILISNIYAAHGRWDD
A9P0W0________________QMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain